barSeed - Barley Seed Development Database

Probe CUST_21432_PI390587928

Source Contig U35_4186

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21432_PI390587928	Hv_44K_v2	AGGACGGCGACCTCATGCTTGTCGGAGATGTTCCCTTCGATATGTTCAGCGGCACATGCA	461	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.971	3.260	1.791	1.017	0.468	0.564
Raw	39.687	216.197	95.093	82.034	13.436	18.496

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58812.1	1191	2e-24	835 - 894	100	60 / 60	plus	ABC09991
MLOC	MLOC_58812.2	1052	2e-24	670 - 729	100	60 / 60	plus	ABC09991
JLOC1	JLOC1_38239.1	1366	8e-25	729 - 788	100	60 / 60	plus
Harvest21	ABC09991	1075	3e-25	669 - 728	100	60 / 60	plus	ABC09991
Harvest21	ABC09992	519	4e-24	462 - 519	100	58 / 58	plus
Harvest35	U35_4186	521	3e-25	462 - 521	100	60 / 60	plus
Harvest35	U35_4185	1075	3e-25	669 - 728	100	60 / 60	plus

Contig Sequence (521 bp)

>U35_4186 521 Hv_44K_v2
AACCACACATCGTCTTCTCAGAGAGCCAGAGCTATCAGATCTCGCTCGCATCGCATCCAA
ACGTACGTGCTTCTAAAGTTCTTCTCCAGCGCAGCATCTTCATTCGCACGTCGACTGGAA
ATGGAAGCTACCGACAACCTCCTCATGGCCACCGAGCTCAGGCTGGGCCTCCCCGGCACC
GACGACAAGCCACAGAGGATCAACTACGTGTCGCCGCCGGCGACTCCCAGGGGCAAGAAG
CGCACCCTGGACGCCTTCGAGGCCACCGCCTCCGATGAGGACGACAAGTCCGACGACGTC
CAGACCGCACCCCCCGTGGCCAAGGCACAAGTCGTAGGGTGGCCGCCGGTGAGGTCGTAC
CGGAAGAGCTGCTTCCAGGCGGCGGCGAGCAAGAGCAAGGCGAAGAAAGCGGACGAGACC
AGCAGCAAACCCGTCCGAGTACGCCATCACCTACGAGGACAAGGACGGCGACCTCATGCT
TGTCGGAGATGTTCCCTTCGATATGTTCAGCGGCACATGCA

Homology of Contig U35_4186 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None