barSeed - Barley Seed Development Database

Probe CUST_21430_PI390587928

Source Contig U35_4188

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21430_PI390587928	Hv_44K_v2	GAAACAAAATGCTTGAGTTGGCCCACACAAGTTTGAGCCAAGTATGTTAAGACCAAAAAA	1672	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72528.1	1250	9e-22	1092 - 1146	100	55 / 55	plus	ABC09515 ABC13981
JLOC1	JLOC1_48238.1	1592	5e-22	1306 - 1360	100	55 / 55	plus
Harvest21	ABC09515	1743	3e-25	1673 - 1732	100	60 / 60	plus	ABC09515
Harvest35	U35_4188	1743	3e-25	1673 - 1732	100	60 / 60	plus

Contig Sequence (1743 bp)

>U35_4188 1743 Hv_44K_v2
AACTCAAACCCGCTTTGTCATGCATTTGACTCGGAGGCCAAAGATGGGCATGACCTGATT
GTTGGAGTATGGTCAGGAGATGTCTATTCGATGTCATTGAGGCAACAGTTGCAAGATCCT
GGAAAGAAGCCTGTTGCGTCTCAACATGGGGATGAATAAAGACAAAGATGGAACTGCCAA
CAGCCGGTGTACTTGTGTTGCATGGGTTCCAGAGCGTGAAGGCATTTTTGTTGTCAGCAA
TGCTGATGGGAATCTGTATGTGTATGACAAATCAAAGGATGGAAATGCTGACTGGGCATT
TCCAACTGTAAAGGATCAAAATCAGCTGGCGATTTCACACGCAAAGTCCAGTAAGAGCAA
TCCTACAGCAAGATGGCACGTCTGTCAAGGTGCAATCAATGCCATTTCATTTTCCCCGGA
TGGAGCTTACATGGCAACTGTTGGGCGAGATGGTTATTTAAGAGTATTTGACTTTGCGAA
AGAACAACTAATATTTGGTGGGAAAAGTTACTATGGTGCTCTTTTGTGTTGCTCATGGAG
TGCGGATGGAAAATATATATTATCAGGTGGGGAAGATGATCTTGTGCAAGTATGGAGCAT
GGATGACAGAAAGATGGTTGCATGGGGCGAGGGGCATACATCATGGGTTAGCGCAGTTGC
CTTCGATTCATATTGGTCCCCTCCAAGTTCTGATGACGCAGGAGAAAATGTCATGTATCG
CTTTGGTTCTGTTGGCCAGGATACCCAACTTCTTCTCTGGGATTTGGCAATGGATGAGAT
TGCTGTGCCACTTCGACATCCTTCCAGCGGCTCCCCGACATTTAGCAGTGGAAGCCCTTC
TGCACACTGGGACAGTGCATGCCCTCCTCCTACTGGTGTTCTTCAGCCGTCTCCACGGAT
GCGAGACGTACCAAAGCTCTCACCCCTTGTTGCACACAGAGTACACGCTGATCCCCTTTC
TGGCCTAGAATTCACCAGCGAATCGATCGTCACCATATGCCGTGAGGGGCTAATTAAAAT
CTGGGCCAGGCCACAACACAGTGAAAACAGCCAGCGGCCAAATTCTTCTGAGCTGGCAGC
TGGTAATGCCATCTCAAAGGATAAGATGATAACATCACCAAACAAAGCAGGCGCATCCAG
CTCTAGCTTCAAGCAACCATCATCTGTTATTTTCTCATGACCAAAGGCTTTTGCTTGCAT
TTTTACCATGCTTGCTCAGCCATGGCCACTCATATCTTGTCACTAACCTGGCGATTAGTG
ACGCAGGGCTTCGCTGGGAAGTCTGCCAGCGACAGAGGCGTACTTCATAGATGTCTATGT
GCCAAAAAGAATAACGGAACTTGCTCCTGTACAGATACAGATATTGTCCCCAGATGAATA
GTACAAGTTTACCGGTTGTTGTTCCATATCATTTGGCTGGTCTTCCATAACATCTCAATA
GATTAGAGTATGTACCCATTCTTTGCATATTAATGGTATCTTCACTTCTTAGGCGCTCTG
GAGGTTACAGATCAGATTCCATTTGCTCCCCATAACGTTGCTTTCCTGCTTGTGTTATCC
ATGGAACTGTAAATTACTGTTGTTTATACAATGTTTCTGAATCCCTTTGGGTATTGTATT
CAATTTCTTCTTCTTTTGAGTGTTGATTTGTCACTTGAATGTAGCTTTATGAGAAACAAA
ATGCTTGAGTTGGCCCACACAAGTTTGAGCCAAGTATGTTAAGACCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_4188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07450.2	564	0.0	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi4g24190.1	566	0.0
Arabidopsis v10	AT3G53390.1	558	3e-144	Transducin/WD40 repeat-like superfamily protein \| chr3:19792781-19796428 FORWARD LENGTH=558