barSeed - Barley Seed Development Database

Probe CUST_21429_PI390587928

Source Contig U35_4189

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21429_PI390587928	Hv_44K_v2	TGTGTTTTGTCAGTTTTGTTGGGTATGGTTGTACATTTCGGTTAACTAAAAGCAGACAGC	582	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251879.1	703	2e-24	597 - 656	100	60 / 60	plus	ABC09843 ABC09844 ABC18182
MLOC	MLOC_45635.1	641	2e-24	67 - 126	100	60 / 60	minus	ABC09843 ABC09844 ABC18182
JLOC1	JLOC1_29623.1	624	8e-25	51 - 110	100	60 / 60	minus
Harvest21	ABC09842	645	3e-25	583 - 642	100	60 / 60	plus
Harvest35	U35_4189	645	3e-25	583 - 642	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_4189 645 Hv_44K_v2
GATCATCCAGATCCATGGCGGGGGGAGGCGTGTGGGTGTTCCGGAAGGACGGGGTGATGG
AGCTGATGAGCGCCGGGGTGCAGCCGTCGGCGGCGGCGGCGCCGAGCAAGAAGGCGCTGG
TGTACGTGCCGGCGAACGAGACGATGCGGTCACTGGAGGCGCTGGAGCAGCGGCTGGGGT
CGCTGGGCTGGGAGCGCTACTACGAGAACCGAGACATCGTGCAGCTCCACCGCCGCGACG
GCGGCGTCGACCTCATCGCGCTCCCGCGAGACTTTGCGAAGTTCCGGTCCACACACATGT
ACGACATCGTCGTCAAGAACAGGCACCACTTCAAGGTCGTCGACATCTAGACATGCATCA
TACATTTACCTATCTAGTTATTACTTTCCCCGGCCAAGCTTGCAAGTATGTTTTGCAAAT
AAGCGCACGTGGACAATGGTGTGCGTGTCGTTCTATATGAGTGTATGTTTGTACTAGTAC
TACTAATAGTTTCTGTGTAACATATGATGATGTTTTTGTACGTTTGTGAATTTTTCCTGG
TTAGCTAGTGTCGGCTGTAGTAGTATTTGATTGACTCTCGATTGTGTTTTGTCAGTTTTG
TTGGGTATGGTTGTACATTTCGGTTAACTAAAAGCAGACAGCTTC

Homology of Contig U35_4189 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None