barSeed - Barley Seed Development Database

Probe CUST_21424_PI390587928

Source Contig U35_4194

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21424_PI390587928	Hv_44K_v2	GGGGTTGTAGATTGTTTGCAACTTGTAATTACTCGCTCCGATTCCCAAATATAAGTCTTT	1099	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.276	3.408	1.096	1.162	0.798	0.760
Raw	33.193	56.857	14.676	26.570	4.997	5.655

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_13912.1	2110	8e-25	1967 - 2026	100	60 / 60	plus
Harvest35	U35_4194	1173	3e-25	1100 - 1159	100	60 / 60	plus

Contig Sequence (1173 bp)

>U35_4194 1173 Hv_44K_v2
CGCGGGTCCTCCTCAACAAGCTCAAGGACTCGCCCAAGCAGACGGCGGACATCTACACTT
TCACCATTGTGCTGGACGGGTTCTGCAAGGTGGGGCGGACGGAGGACGCCATGGCCATCT
TTGAAGATGCCATCCGGTTGGGCCTCTCGCCCACGATTTTCACCTACAACGCGCTGCTCA
ATGGCCATTGCAAGGAGGGGAACCTGCTGAAAGCGTATGACCTGCTTATGGAGATGTGCG
ACAACGACGATTGCCCGCCGGACAAGATCAGCTTCAGCATTGTGCTGCCGGCTCTGCTGC
GAGCAGGCGAAGTCTCTGCAGCGTGGAAGACGTTCAAACGCATGGAGCACGCCGGGTTCG
AGGCGGACAGCCGCGCGCTGGACACCCTGGCCCGGGGGCTATGCCGGCAGTGTGCGGCGG
ACATCTCGGTCCTGAGGGAAGCCAAGGAGGTGTTCGGCAAGGTCGTGGCCGCCGGGCACG
AGCCGGTGTCGTACACGTACTGCCTGATGGCGCAGGCTCTGGCACGCGGCGGCGAGGTGG
ACGCGGCCGTGGCCATATTGGACGACATGGTGCGCAAGGGGTACGCGCTGCGGAAGCGCG
CGTACACGGACGTGGTGCGCGCGCTGTGCGACCGGAGCAGGACTTACGACGCTCTCCGGG
TGCTGGCCGTGGTGATCGCGAAGGACTTCGTGCCCGGCCGGAACGCGTTCGACGCGCTGC
TCGAAGAGCTCAGCCGGCAGGGGAGATGGCCCGACGCCATGGCAGTGTACGCCGCTGCGG
TGAAGCGGGGCGTCGTTGTGTCGCTGAAGCGTCACGTCAAGGAGGCGCTGGCGCGGGATC
AGGAGAAGGAAGAGGCGTGGGAATCACCGGCGCAGTTGGGTGTCCCATAGTGAGCGATTG
TGCTCCGCAATTCTTCGGGGCTTTTCCATTCGATGCTGAATATAGTGATTTGACTCTGCC
GTGCAAATGCCTGATGGGTTCTGGTGGAAAAGATCGTGCCATCACTGCACTAGAACAGAG
ATTGTTTTCCATATCAGACTGTACTGGAGCATCAGCATGACAACATCATGCATCCAGTAA
TGATGAATTATTCCGCCGCGGGGTTGTAGATTGTTTGCAACTTGTAATTACTCGCTCCGA
TTCCCAAATATAAGTCTTTTTAGAGATTTCATA

Homology of Contig U35_4194 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21780.1	546	5e-159	protein\|pentatricopeptide repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g63190.1	539	0.0
Arabidopsis v10	None