barSeed - Barley Seed Development Database

Probe CUST_21421_PI390587928

Source Contig U35_4197

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21421_PI390587928	Hv_44K_v2	AGCGTCAGACCCCCTGTATACACCAGAAGTCAGATTCATTCAATTATTTACTTCAAAAAA	1492	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53215.1	1711	9e-22	1551 - 1605	100	55 / 55	plus	ABC09693 ABC12980
JLOC1	JLOC1_34165.1	1713	5e-22	1553 - 1607	100	55 / 55	plus
Harvest21	ABC09693	1563	3e-25	1493 - 1552	100	60 / 60	plus	ABC09693
Harvest35	U35_4197	1563	3e-25	1493 - 1552	100	60 / 60	plus

Contig Sequence (1563 bp)

>U35_4197 1563 Hv_44K_v2
GAGAGCGTGAAGCTGTTCGTGGGGCAGGTGCCCAAGCACATGACGGAGGCGGAGCTGGCC
GCCATGTTCAAGGACGTGGCCGTCGTCGACGAGGTCACCCTCATCAAGGACAAGGCCACC
AAGGCCTCCCGAGGGTGCTGCTTCGTTATATGCCCCTCCAGGGACGAGGCCGACAAGGCG
GTGAATGCGTATCACAACAAGCACACGCTCCCGGGGGCGGCAAGTCCTTTGCAAGTAAAA
TATGCTGATGGAGAGTTGGAGAGGCTGGAACACAAGCTTTTCATTGGAATGCTTCCAAAA
AATGTAGCAGATACTGAATTGACTGATTTGTTTTCCAAATATGGAAATATCAAGGATTTG
CAAATTTTGAGAGGTTCACAGCAAACAAGTAAAGCTGGATGCGCCTTCATTAAATATGAA
ATGAAGGAGCAAGCAGTGGCAGCTATTGAGGATCTAAATGGGAAGCACAAAATAGAGGGT
TCTAGTGTGCCGTTGGTTGTCAAATGGGCTGATACAGAAAAGGAAAGGCAGGCACGGAAA
GCACAGAAAGCTCAACTGCAATCTCCTAATATGCCAAATGGACGCCCAATGCCACAGTCC
TCAGTATTTGGAGCTTTACAGATGGGATATATGCCTCAGTATAATGGATTTAGTTATCAG
CCTCCAGGGACATATGGACTTATGCAGTACCCTTTATCTCCTATGCAAAATCAAGGCCCC
TTTCAGAATATGGGTCAGCCTGTTAATCAAGGGAACTCGATACGAGGAGTCAACCCTGAA
CTGTCCCCCAATTCAGGTCCTAGATCATTTAACCCAATGCACTTAGGCAGCCCATATCCA
GCAGTACCTGGTATGCAGTACCAGGGATCCTACCCTGGTGGTCCGATGAATAGTCGTCCT
TTTGGGAATCCTCACAATCCTCTTAAAGTTCCAGGTGTAAATGTCAATTCTGTCGCATTT
AGTCCCCGTAGCAATGGCGGCGGCCAAACACAAACAGAAGGACCTCCTGGAGCCAATCTA
TTTATCTATCATATCCCACAAGAATTTGGTGACCAAGAACTCTCCGATGCCTTCCAGAGG
TTTGGTAGAGTAATAAGTGCCAAGGTGTTTGTTGACAAAGCAACTGGTTCCAGCAAATGC
TTCGGTTTTGTAAGCTATGACAACCCTGTGTCTGCACAGTCGGCAATCGCCATGATGAAC
GGTTTCCAGCTAGGTGGCAAGAAACTCAAAGTACAACTCAAGAGAGACAACAACAACAAG
CACAGTAAACCTTTTTGACAAAAAATCATCTGTGATGACAATGCGGTCTTGTTCCCGGTA
CATATTTGTCAGATAGTTGACCGTGACGCTGATTGTTTCCCCTCTTGGCCCTGCGGGGTG
CACCGTGCCGCCCAGCGAATCTGCCTGGGAGCTCCATGTATCTTCTAAGTTCAGTTGACA
TTCTCAAGCAAATTTGTTGCATTGTGTTATTTTATTATCTCAGCTTAGCCGTAGCGTCAG
ACCCCCTGTATACACCAGAAGTCAGATTCATTCAATTATTTACTTCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_4197 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g71200.1	461	0.0	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi2g60300.1	451	0.0
Arabidopsis v10	AT4G03110.1	441	7e-151	\| Symbols: AtRBP-DR1, RBP-DR1 \| RNA-binding protein-defense related 1 \| chr4:1376612-1379275 REVERSE LENGTH=441