barSeed - Barley Seed Development Database

Probe CUST_21409_PI390587928

Source Contig U35_21211

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21409_PI390587928	Hv_44K_v2	CACGAGCCTCTCAACTCCAGCTCTTCGATCATTGTGTTATTACTTTATTACTTTATTATG	664	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360249	4481	2e-24	4314 - 4373	100	60 / 60	plus	ABC15119
MLOC	MLOC_67557.2	951	2e-24	818 - 877	100	60 / 60	plus	ABC15119
JLOC1	JLOC1_44624.1	946	8e-25	687 - 746	100	60 / 60	plus
Harvest21	ABC15119	725	3e-25	665 - 724	100	60 / 60	plus	ABC15119
Harvest35	U35_21211	725	3e-25	665 - 724	100	60 / 60	plus

Contig Sequence (725 bp)

>U35_21211 725 Hv_44K_v2
CAGGCAATTGGGTACGAGGCACAATGTTCGTGTTATCACTAGAAGAGTTGGTGGTGGCTT
CGGAGGAAAAGCTGTTAGATCACTACCAAAGCCGTGATCCTGAAGTTTTGAGTATCCTCA
CACCCAAATAAGAAGATAGAACATCTGTACATATCTTCACCTTATAAGCATACAGATACA
GATTGCTTCAGCTGTAACAGAACTAAAAGCATATTGTTATACCGAATATTGAAGCCGAAT
TGTCTCTTTTAACAAGATTCCTTCTGATCTAGCCATTTTCTTATGACATACTTCATATGA
AGTTTTCAAGTGCTACATATAGGAGGAGGCAGGGGTGGTGCAGTCTTGCTGCTAAAGTGC
TAAAAACTTGAAGAACATACTCATTTAAACATTGTTAAGTGGCGACAGCCTGTGCACTTG
CAGCATTTAAGTTGCGTCGTCCTGTTCGAATGTATCTGGATCATCTTCGCCTTCTTTCTT
TGAGTTGGAAGTTCCAGCAATCATGCCTGTGGTGAAGGAGTTGTGTGGCTTGGACAATGT
GGAGAAGTATTTGGAAACTCTAGTGGGTTCCAAATAAATACAGACGAAATTCACATCTGG
CAAAGTAAATTATAATTATTAATAGAACGTCCATGCGTTGTCACGGGCCAACAAATGGAT
CTATCACGAGCCTCTCAACTCCAGCTCTTCGATCATTGTGTTATTACTTTATTACTTTAT
TATGT

Homology of Contig U35_21211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None