- Probe CUST_21402_PI390587928
- Source Contig U35_21218
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21402_PI390587928 | Hv_44K_v2 | GTATGGACGATCAAGGCCGATTATATATGCTAGTAATAAATAAGGTAATTGTTGGAGGAA | 556 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.145 | 0.274 | 0.461 | 1.620 | 1.731 | 1.661 |
| Raw | 85.859 | 249.391 | 370.967 | 1968.753 | 758.261 | 784.888 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73824.1 | 1560 | 2e-24 | 105 - 164 | 100 | 60 / 60 | minus | ABC14898 |
| MLOC | MLOC_73824.2 | 1562 | 2e-24 | 105 - 164 | 100 | 60 / 60 | minus | ABC14898 |
| MLOC | MLOC_73824.3 | 1558 | 2e-24 | 105 - 164 | 100 | 60 / 60 | minus | ABC14898 |
| MLOC | MLOC_73824.4 | 1288 | 2e-24 | 2 - 61 | 100 | 60 / 60 | minus | ABC14898 |
| MLOC | AK354552 | 1036 | 2e-23 | 979 - 1036 | 100 | 58 / 58 | plus | ABC14898 |
| JLOC1 | JLOC1_49163.1 | 1251 | 8e-25 | 1167 - 1226 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14898 | 631 | 3e-25 | 557 - 616 | 100 | 60 / 60 | plus | ABC14898 |
| Harvest35 | U35_21218 | 631 | 3e-25 | 557 - 616 | 100 | 60 / 60 | plus |
Contig Sequence (631 bp)
>U35_21218 631 Hv_44K_v2 CATGGGGTCCCAGGCCGCCCTGGCCAGGATGGCCAGCGGGGTGGACCATACGGCCGTGCT GGCGCTGGACGCCCAGTACAAGGAGATGGTCGACGAGCAGCCCGGCAACGCCCTGTTCCT GCGCAACTACGCGCAGTTCCTGCACGAGGTGAAGTGCGACGCCAGAAGGGCGGAGGAGTA CTACTCGCGCGCGATGCTGGCCGACCCGACCGACGGCGAGATCATGTCGCAGTACGCGAA GCTGGTGTGGGCGGTGCACCGCGACCACGAGCGGTCCCTCACCTACTTCCACAAGTCGGT GCAGGCTGCCCCGCGGGACAGCCACGTCCTCGCGGCGTACGCCAGCTTCCTGTGGGAGCA GGACGAGGAGGAAGACGACGATGGTGGTGTTGGGGCAGGCGAGCAGGGTGCACCCGGGGG CGCTGCGCAGCCGAGGCAGCTGGCTTCTGCTGCCGTTTGACTACCACCAGGGTGGGCCAG GGCCGCTCGAGGCGTGCCCGCCAACGATCTAGTATGTGCTGATGCTTGCATGATGTTTGT GTGTAATCAGCGGAATGTATGGACGATCAAGGCCGATTATATATGCTAGTAATAAATAAG GTAATTGTTGGAGGAAAAAAAAAAAAAAAAA
Homology of Contig U35_21218 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g43160.1 | 278 | 5e-56 | protein|expressed protein |
| Brachypodium v1_2 | Bradi5g15396.2 | 275 | 3e-67 | |
| Arabidopsis v10 | None |