barSeed - Barley Seed Development Database

Probe CUST_21401_PI390587928

Source Contig U35_21219

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21401_PI390587928	Hv_44K_v2	TGCCTGTTATCCTTCTGGACCGAGAAAATTCCCGTTGTTAGAAGTCATTAAACTGGCAAA	734	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354977	1461	7e-23	1361 - 1421	98	60 / 61	plus	None
MLOC	MLOC_34336.3	800	9e-22	1 - 59	98	58 / 59	minus	None
JLOC1	JLOC1_22124.2	836	4e-23	742 - 802	98	60 / 61	plus
Harvest35	U35_21219	797	3e-25	735 - 794	100	60 / 60	plus
Harvest35	U35_40824	530	1e-23	456 - 516	98	60 / 61	plus

Contig Sequence (797 bp)

>U35_21219 797 Hv_44K_v2
GTGCAAAAGGCGCAGGTGTGCCTGTTATCTTGGATGCAGGTGGAATGGATGCTCCTGTCC
CAAGAGAACTACTTGAACTGGTGGATATTTTTAGTCCAAATGAAACAGAGCTAGCACGTT
TGACTGGGATGCTTACAGAGACTTTTGAACAAATCAGCCAGGCTGCAGGAGCATGCCATA
AAATGGGTGTGAAAGAAGTTTTGGTTAAACTTGGGTCACAAGGATCTGCTCTGTTTGTTG
AGGGAGAGGAGCCAATTAGACAGGCGATAATACCCGCCACAGAAGTAGTGGACACCACCG
GTGCTGGCGACACCTTCACGTCAGCTTTTGCCGTGGCTCTGGTGGAAGGGAAGCCTAAGA
AAGAGTGCATGAGATTTGCTGCCGCCGCCGCCTCACTGTGTGTTCGGGTAAAGGGAGCCA
TTCCCAGCATGCCTGACAGGGAAACCGTGATGAGCCTTCTAGAATCCGTGCAAGCCGAAT
AACCGGAGAAAATGGTGACTTTAGCCGCCCTATTCATCAGCAATAATGTGAGCTGTTAAG
CCTCAATCTCCTTTCTGGGTTCATTTTGTTTCGGGCAATGTATATTTGCGGCCCCGCTTC
AAGTTATGGCGGAGGAAATAAGAGAAAATGGCATTCCTCGTGCCGTGCCGTCCTCCGTAG
AAGTTCAGGAGTTGTAGGTCTGTTGCTTTTATAGTCGTTCCCTGTTACGCCATAGCATTT
CTACTGTTAGGCATTGCCTGTTATCCTTCTGGACCGAGAAAATTCCCGTTGTTAGAAGTC
ATTAAACTGGCAAAAAA

Homology of Contig U35_21219 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g47550.1	368	2e-93	protein\|kinase, pfkB family, putative, expressed
Brachypodium v1_2	Bradi2g45890.1	362	2e-94
Arabidopsis v10	AT1G17160.1	379	5e-77	pfkB-like carbohydrate kinase family protein \| chr1:5867678-5869215 FORWARD LENGTH=379