barSeed - Barley Seed Development Database

Probe CUST_2139_PI390587928

Source Contig U35_11025

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2139_PI390587928	Hv_44K_v2	GACATTAGAGGAAATGTATGTCTGGCTGTACTCAAATGGTAGACATGTTTGATCAAAAAA	941	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.558	1.725	1.161	0.848	0.424	0.670
Raw	464.986	817.186	473.177	543.986	93.923	161.249

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375886	3179	9e-22	3110 - 3164	100	55 / 55	plus	ABC25813
MLOC	MLOC_18033.1	655	9e-22	586 - 640	100	55 / 55	plus	ABC25813
JLOC1	JLOC1_12465.1	767	5e-22	586 - 640	100	55 / 55	plus
Harvest21	ABC25813	1011	3e-25	942 - 1001	100	60 / 60	plus	ABC25813
Harvest35	U35_11025	1011	3e-25	942 - 1001	100	60 / 60	plus

Contig Sequence (1011 bp)

>U35_11025 1011 Hv_44K_v2
ATGACATCCTAACACGGGCTTTTGATCAGTTGCTGGTGGTGCTGGGAAGGTTTCAAACCA
AGATCAAGTCTGAAACAAGAAACAAAAGTTCTGAGATACTGGCAGGTACCGGAGAGATAA
TACGCCAGCACCTCGAGGGAGTTGAGGTGCAGATGCAGGATGACGTGGATAAGCTGGTCA
ATGCAGGAAAATCTAAAAGAAAGCGACTAGAATCAACATTTGAAGAGCAACAAGAACAGT
TAAGGGTTCTTCATGAGAAGTTTAAGGAGGAGGTTAATCAGCAGTTGCTTGGTTGCAAGA
ACTCTCTTGAGGAATTTGAAGCCTATCATGCAGAACTGAAGGGAGTAGCTGATAAGCAAA
AAGCATCACACAAGAAGCTCCTCCAACACGCTGAGAGAACAGTTGGTTCTCAGCTCAACG
ACGCTGAAATCAAAATCTCTGAGGTTCAGAAGAGAGCCCGTAAGAAGATGAATGGCCTAA
AACACGTACTCAAGGAGCTCATCACCGAAACTGCAGATTGATCAAGTCCACCTGCGCTAC
ACAAGTAGGTAGATAGCTACCGCGAAACCAGTAGGGCACCACATTGCAAACAGGTCTACG
GCTCCATTTTACAAAGGGTATAGAAGGATGATGCCAGAGCGCATGTAGAGTTCCTTTGCT
CACAGTTGCAGTTTGAACTACGCCTTAGTACGAGCCCATATTCGTAATTCTCCATAGCAT
CGTTTCACCATTTCTACCATTTTGAGTCAGTGACTCACTAACCTAATACCCGGGCAATTT
CCCACTAGTGTCTTAAACCATGACACGTTTCTTCAATGAACTGTGTCCTGACTCGAGTAA
TGTGATGACCCAGTACACAACCGCATGCGATAGTTGAGTTGTATTCGTCTGGTGGCATCT
TTGGTTCTTTGAGCTTTTGTGCATGAGATTTGGGTCAAGAAGACATTAGAGGAAATGTAT
GTCTGGCTGTACTCAAATGGTAGACATGTTTGATCAAAAAAAAAAAAAAAA

Homology of Contig U35_11025 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g26560.1	815	3e-91	protein\|expressed protein
Brachypodium v1_2	Bradi3g59847.1	851	5e-91
Arabidopsis v10	None