barSeed - Barley Seed Development Database

Probe CUST_21399_PI390587928

Source Contig U35_21221

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21399_PI390587928	Hv_44K_v2	TCTGATGTCAGTATCTCTTCCTTGGGACTTCATTGCCCATGACTTATTGCACAAGGAAAC	402	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360844	1759	2e-24	1395 - 1454	100	60 / 60	plus	ABC17510
MLOC	AK369830	2987	2e-24	2384 - 2443	100	60 / 60	plus	ABC17510
MLOC	MLOC_15952.2	872	3e-22	6 - 61	100	56 / 56	minus	ABC17510
MLOC	MLOC_15952.1	995	3e-22	25 - 80	100	56 / 56	minus	ABC17510
JLOC1	JLOC1_10968.3	1220	1e-22	1161 - 1216	100	56 / 56	plus
JLOC1	JLOC1_10968.2	869	1e-22	810 - 865	100	56 / 56	plus
JLOC1	JLOC1_10968.1	942	1e-22	883 - 938	100	56 / 56	plus
Harvest21	ABC50976	590	3e-25	506 - 565	100	60 / 60	minus
Harvest21	ABC17510	1012	3e-25	403 - 462	100	60 / 60	plus	ABC17510
Harvest35	U35_21221	973	3e-25	403 - 462	100	60 / 60	plus

Contig Sequence (973 bp)

>U35_21221 973 Hv_44K_v2
GAGCAACGTCAGTTCAAATATTAAATCTGGGTTCAACTCTGGGAGCAATGGAGAGAGCCC
ACCAAAGAGAACTCTCTTCTCAGGCTACGTCAGCTATCAAAATGTCCGGGAAGCTTATGA
TGCTGGCAGATCCAAATTCGGGAGCTTTCTCTCACTTGGGCAGGACAATACTAAACTCGA
TAAACTTTTCATGAGGGGCCCTGAAGGACGTGGGGAAGTTGAAGTTGCTGTTTCTGGGAT
CGCAGATCAGAGCCGTGAGAGACCGAAGAAAGACTCGGGAGATAACTTCCGGGTTCTTGT
TCGTAAGGCGGCTTCTGCTGCATCAAAGCTAGCAGAGCATGCCTTCGAGGCTGCATCTGC
CAACAAACGGTTGGATGATAAGCTTCTTCCGCTCAAGTGTTGTCTGATGTCAGTATCTCT
TCCTTGGGACTTCATTGCCCATGACTTATTGCACAAGGAAACGCCACCTCTGGACTTCTG
AGGCTGCAGTTCCACCGTGACCGTGAAGGGTTGTTCATGGAATTCCTACGCATGCAACCA
GGAAACCTCCGCTGTTGTAGAGATTGCGCTGAAGTTTGTGGTTGGATGTGTTGCGGACTT
CAGGCGAGGAAGACGAGGGATGGAGCTACCCAGGAAATTGGGGTATACGACGTGCGTTGT
GTACTTTGTTAGATCAAAACTTGGTAGTGTTTGAGCCCGTCTCTGTGCTGCAGACTACTC
CGTAGATGACTAGGGCATGTAAATATCCAGTGCTCCTCTTTCTGTGGGAAAATTTCGTCG
TCGTCATGTCTTGCGCCGTCTAGCGAGCAAACCTGCTGCACGTACGGTCTCTGTGGCCTG
TAGGGTGGAGAAGACGTGCCCGGCAGTTGCTCGGACCTGTGGTGACTGGAACAGGGAAGC
TGGCCCTTTGCTCCCTTTTAGCTCACACTGTCTTTATGCTAAATTTTTTTTTCAGTGAGC
GGCCGCTCGAGCA

Homology of Contig U35_21221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g10420.1	406	2e-63	protein\|CW7, putative, expressed
Brachypodium v1_2	Bradi3g21520.1	403	5e-70
Arabidopsis v10	None