barSeed - Barley Seed Development Database

Probe CUST_21398_PI390587928

Source Contig U35_21222

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21398_PI390587928	Hv_44K_v2	CACTGTCTTTATGCTAAATTTTATTTTTCAGTGAAAACCGGACAGAGTTTTGCTTCTCTC	458	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369830	2987	2e-24	2906 - 2965	100	60 / 60	plus	ABC17510
MLOC	MLOC_11774.1	970	2e-24	106 - 165	100	60 / 60	minus	ABC17510
JLOC1	JLOC1_7839.1	812	8e-25	117 - 176	100	60 / 60	minus
Harvest21	ABC17510	1012	1e-24	937 - 995	100	59 / 59	plus	ABC17510
Harvest35	U35_21222	603	3e-25	459 - 518	100	60 / 60	plus

Contig Sequence (603 bp)

>U35_21222 603 Hv_44K_v2
TGAGGCTGCAGTTCCACCGTGACCGTGAAGGGTTGTTCATGGAATTCCTACGCATGCAAC
CAGGAAACCTGCGCTGTTGTAGAGATTGCGCAGAAGTTTGTGGTTGGATGTGTTGCGGAC
TTCAGTAAATGGGGTGCGAGGAAGACGAGGGATGGAGCTACCCAGGAAATTTGGGGTATA
CGACGTGCGTTGTGTACTTTGTTAGATCAAAACTTGGTAGTGTTTGAGCCCGTCTCTGTG
CTGCAGACTACTCCGTAGATGACTAGGGCATGTAAATATCCAGTGCTCCTCTTTCTGTGG
GAAAATTTCGTCGTCGTCATGTCTTGCGCCGTCGAGCGAGCAAACCTGCTGCACGTACGG
TCTCTGTGGCCTGTAGGGTGGAGAAGACGTGCCCGGCAGTTGCTCGGACCTGTGGTGACT
GGAACAGGGAAGCTGGCCCTTTGCTCCCTTTTAGCTCACACTGTCTTTATGCTAAATTTT
ATTTTTCAGTGAAAACCGGACAGAGTTTTGCTTCTCTCTTTTTTTAGGAGGGGGGGAACC
AATCCAGTACCCAGTACAAGTTTTACAAGGTAACTAAAAAAAAAAGAAAAAAAAAAAAAA
AAA

Homology of Contig U35_21222 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None