barSeed - Barley Seed Development Database

Probe CUST_21385_PI390587928

Source Contig U35_21230

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21385_PI390587928	Hv_44K_v2	GTGATCATGCATCTTGTGAAGATGACATATTTTTAACTCTTAGAAACACTGATACCGATC	1562	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.583	1.824	1.097	0.867	0.365	0.480
Raw	318.966	564.330	308.830	384.834	55.443	80.790

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365434	2460	2e-24	2358 - 2417	100	60 / 60	plus	None
MLOC	MLOC_72312.1	908	2e-24	806 - 865	100	60 / 60	plus	None
JLOC1	JLOC1_48089.1	2006	8e-25	1880 - 1939	100	60 / 60	plus
Harvest35	U35_21230	1669	3e-25	1563 - 1622	100	60 / 60	plus

Contig Sequence (1669 bp)

>U35_21230 1669 Hv_44K_v2
CATTTGCATAGGGCAAACTTTTCATGGGAAAAGGCTGAAGAGCTGAAGAAGGAACATTGC
TATATAGCTGCTGATTATATGTCAGAGTTGCAGATATTCAAAAATAACAAGGAAGAAGCT
GAAGAGAAGACTAGGTATTGGCAGCTACCATGGGTACCCCCACCCAGAGATGAACCGCCA
TCTGAGGAAGAGCTTGCGAGGAAGGCGGCTTATAAGGAAAAGGCTGGTCAACGTCTGCGA
GACATGGCTGCTGCAAAGAAGTCTCAGAAGATAGCAGATCTGGAAGAAAAACTCTCTGGC
CTGGAGGATTTGATGGATCACCTTGATGGAGCTGATGAACAAGAAGCAACGTCTATTCTG
GGTAGATCTGGATACCTTTCCCAGCAGGAAATCAAGTCTGATATTCTGAAAGCAACACAA
TCTCTAAGAAAAGCGAAGGGGGAGTCCAATGGCAATGAGGAGAATGCAGATGCTTCAGGA
GCTGATAAGTACCCACTTGTATCAGTCCCTGATGACATGTTGACACCAGAGCAGTTAAAG
GAAAAGAAGAAACAGATACTACTTAAAACCACAACAGAGGGCAAGCTGCGCGCCAAACAG
AAGCGTGCCGAGGAGGCAGCATTGAGGGAGAAGCAAGAAGAAGAGAGGCGCACGGAGAAC
CCAGAGTTATACTTTGATGAGCTCCGTGCCCGATATTTAGAACTTTCTGAGAAAGTCGAT
CAGAGGAAGCGACAAAAGGTTAACGGCAACAATAATTCATCTGGCGCCGTAGGCCGTGGC
GAGCGTCTAAATGCCGTCCAGAAAGAAAGAATGCGGCTGCTCACCACTGCTGCATTTGAC
CGAGGGAAAGGCGAGGACACTTTTGGAATGAGAGATGAAGATTGGTTGGTCTACAAAAAG
ATGAGCAAAGAGAGCGAGGAAGATGATGGAAAAGATGATGATGAATCAGAACTTGCTCGA
ATCGCGTCAAAAATCCAGGAGGTGGACCCTACGTTTGTGAACAAACATGACGCTGTTGAA
CCAGCTCCAGACCCTCATAAAATCCGGCCTCTCACTGCAGAGGATTTCAAAATCGCCATC
GGGATCGAGCGGTTCCGCTGCCCTGAAGTACTTTTCCAGCCAGGCATGATAGGACTCGAC
CAGGCTGGCATTGACGAGATGGTCAGCATCTCCCTCAGGAGGTTAATGGAGGACGAGTCC
GTCAAGGAGCGCCTCTGCCAGTCCATCCTCGTCACGGGCGGCAGCTCCCTGTTTCCCGGG
ATGATCCCTCGGCTCGAATCGGGGATCCGGCAGTTCCGGCCCTACCTCACGCCGCTGAAG
CTGGTGAGAGCCGCCGACCCCATCCTGGACGCGTGGCGGGGTGCTGCGGCCTTTGCGGCT
TCCAGCAAGTTTGGGAAGCAGACCTTCACATTGGCGGATTACAGAGAGCACGGCGAGAGC
CTGTTCCATCGCTACAACATTGTCTACACGCTGTAGCAGCCTTCTGTTGGTGTCTTCTCC
GCTAGCGTATAGAGAAACTGACGCGTCTTGCTTGTAAACAAAAGTTTTTTTTTTTTTTGC
TTGTGATCATGCATCTTGTGAAGATGACATATTTTTAACTCTTAGAAACACTGATACCGA
TCATTATTGTTTATTAGTCAGTATATTAATTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi2g02976.1	591	0.0
Arabidopsis v10	AT3G12380.2	730	2e-135	\| Symbols: ARP5 \| actin-related protein 5 \| chr3:3938309-3941785 REVERSE LENGTH=730