barSeed - Barley Seed Development Database

Probe CUST_21380_PI390587928

Source Contig U35_21236

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21380_PI390587928	Hv_44K_v2	CCAATCCATATTACTTGTCTTAGGTCTTTGATAGCAAACTTATACGTCAACTTTCTGACT	772	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.949	1.494	1.699	1.307	0.608	0.364
Raw	16.643	41.977	39.610	46.166	7.062	3.742

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56950.1	1310	7e-23	52 - 111	98	59 / 60	minus	ABC17954
JLOC1	JLOC1_36860.5	1727	4e-23	1648 - 1707	98	59 / 60	plus
JLOC1	JLOC1_36860.4	1734	4e-23	1655 - 1714	98	59 / 60	plus
JLOC1	JLOC1_36860.3	1270	4e-23	1191 - 1250	98	59 / 60	plus
JLOC1	JLOC1_36860.2	1246	4e-23	1167 - 1226	98	59 / 60	plus
JLOC1	JLOC1_36860.1	1488	4e-23	1409 - 1468	98	59 / 60	plus
Harvest21	ABC17954	906	3e-25	771 - 830	100	60 / 60	plus	ABC17954
Harvest35	U35_21236	908	3e-25	773 - 832	100	60 / 60	plus

Contig Sequence (908 bp)

>U35_21236 908 Hv_44K_v2
ATTTCAGAAGATGTCACACCACCAGCGCCAGTGTTGAAGGCATTGAGCATATTATCATGC
CTTCTTCCAGAAGCGAAGTTATTTCCGCAAAAAGACATAGGAGATTTGGGATTCAGGGAT
CCAGTGAAGAGAAAATTATGTGAGTACAACGCGATATCATATAATGACCAGATGAGGTTG
AGGACAGCAGTTGAACTTTTGAAGGCTACAAAGGACATTGAATCCCAATTGGAAAAAATT
TGTTCCCCATTGCTGATTCTTCATGGAGCAGCAGACCTGGTAACCGACCCTCATGTGAGT
CAATTTCTGTACGAGAAGGCCAGCACGAAAGACAAGACCCTGAAACTCTATGAAGGTGCC
TACCACTCTATCCTCGAGGGAGAGCCTGACGACCGGATTTCAACCGCCATCAAGGACATC
ATTTCCTGGCTGGATTCACACTGTTGAATACCATTGTGCATGGTCTCGTTGATCTGCACC
ATTCTGTTCCACTTAATATTGGATGAATCAAATAATAATACTCGGTGTCTGAGGACTTCA
CTTTTTTTTCTTTTTTCTTTTTGCAAATGAGGCCTTCACTTAATTAGTGAGCATGAAATT
CTATGCTGCTTAGTTTCAGGAACGTGTTGTAGAGAGATTTTCTACCCCATTTTCCGGAAG
TCCGGTTTCACATTTTCAAAAAAAAAAAAAAAAAGTTGGCTATTTGATGCCGTTAGCAGG
GGCTATGTATTTGTTGTCTTCTTGATCTTTGATGTTTTAGTTGTTACTCCCTCCAATCCA
TATTACTTGTCTTAGGTCTTTGATAGCAAACTTATACGTCAACTTTCTGACTAAAATGAA
TCTCTTATTCATATGGCATAAAATGGAAAATCTTGATCGAGATTTCTTCTCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_21236 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49380.1	388	7e-90	protein\|lipase, putative, expressed
Brachypodium v1_2	Bradi2g46910.1	378	1e-94
Arabidopsis v10	AT1G77420.1	382	9e-55	alpha/beta-Hydrolases superfamily protein \| chr1:29093641-29095442 FORWARD LENGTH=382