barSeed - Barley Seed Development Database

Probe CUST_2137_PI390587928

Source Contig U35_11027

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2137_PI390587928	Hv_44K_v2	TTATTGCAAGTACAATGAGCTTTTGCAAGTGAAAGGTGTCTTGCAAGTTTGCTGTTTAAA	414	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.986	2.168	1.178	0.712	0.300	0.338
Raw	49.651	85.411	38.931	39.930	4.150	6.008

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC42123	487	3e-25	15 - 74	100	60 / 60	minus	ABC42123
Harvest35	U35_11027	488	3e-25	415 - 474	100	60 / 60	plus

Contig Sequence (488 bp)

>U35_11027 488 Hv_44K_v2
AGGGTTGTCGTCCCGTTTCTCATCCGGAGCTGTGCAGAGGAACTTCCTGTGAGGAATTTG
AGTCTGACTGCTCGAGGCATGCCAAGGGAGAGCATGGCCTAATTGGCGGCCAGTACCGCC
GGATGTCGAAATTGCTAGGGGCACAGAAACCATAGAGAATGTGAGGTTTGTGACATTGCT
GGTTTGCATGTTGTTTTCTGGAGAGAGCTGAAGTTATCTGAGACATGTAAAAAAAAGGGT
TTTTCTTGTGAGTTGTTTCATACTGTGTAACACAGCTCCAGGTAGGTCTTCGTACCTGGC
TCATTTTTACTGAATGCGAAGGCCAATGCTTTGAGACTTAAAATGATGGAATAATGCTGT
ATACTATCCTGCTATGCTACCAGTCATTGGCTGATCATGCTAGCCTACCGATACTTATTG
CAAGTACAATGAGCTTTTGCAAGTGAAAGGTGTCTTGCAAGTTTGCTGTTTAAAAAAAAA
AAAAAAAA

Homology of Contig U35_11027 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None