- Probe CUST_21373_PI390587928
- Source Contig U35_33215
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21373_PI390587928 | Hv_44K_v2 | GTCATGTTGAACTGAAAGTAACTCACAGTGAAGCCGGTGGTGTTTGCTGGATGCAATGAA | 456 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.726 | 2.299 | 1.047 | 0.867 | 0.444 | 0.601 |
| Raw | 208.591 | 451.430 | 172.496 | 229.101 | 41.158 | 59.433 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54404.1 | 3519 | 2e-24 | 181 - 240 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_54404.2 | 3456 | 2e-24 | 181 - 240 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_35014.2 | 3278 | 8e-25 | 3128 - 3187 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35014.1 | 3473 | 8e-25 | 3323 - 3382 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_33215 | 528 | 3e-25 | 457 - 516 | 100 | 60 / 60 | plus |
Contig Sequence (528 bp)
>U35_33215 528 Hv_44K_v2 TGGGAGCATCGTCGAGTGCAGTGAACGAAGCACATTATTGTCTTTCCTGATTAAAGTTGA TGGCTATGTCGCTGTGTTCAAGCCTGACCCGATCAAGGAAGTACTGAAAATACCGAGGAA AGAGAACCTGAGATTTTCTCATCGAATTCCGTCATTCCGTCTCACAGAAGAGAAAGGCGG CAAGCTCCGGGACTTCTACGAGCTTGACCCAGCTTCTGTCCCCGGTGATTTTCTGTAGAA GGGCGCCCTCCTTGAATTGACACTGTTAACGCTTGCCTTTTCGGAGGACAGCAAGAGGGA ATTAACCACACGATATGTAACTATAGGCAGCTTTGTGTTTTGCGCCTGAACCTAGGGCAT GGCATATGCTGGCTAAATGTGGCGCATTTGTATCGCAGGACCATGCATGCTAAGTTTCTT TTGGGGTCTCTTAATTTAGTTAGTGTAATATTGGCAGTCATGTTGAACTGAAAGTAACTC ACAGTGAAGCCGGTGGTGTTTGCTGGATGCAATGAAGCTGTTGTGCCA
Homology of Contig U35_33215 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |