barSeed - Barley Seed Development Database

Probe CUST_21364_PI390587928

Source Contig U35_21246

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21364_PI390587928	Hv_44K_v2	AGAGTTGAATGTGGAATTTTGTTACGATACCATGTAAGAAGCTCTATACGTCTGTGCCGC	1370	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.024	2.470	1.069	0.970	0.449	0.660
Raw	75.114	148.008	55.261	78.372	12.361	20.650

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67281.5	1950	2e-24	382 - 441	100	60 / 60	minus	ABC15129
MLOC	MLOC_67281.4	1581	2e-24	382 - 441	100	60 / 60	minus	ABC15129
MLOC	MLOC_67281.6	1645	2e-24	182 - 241	100	60 / 60	minus	ABC15129
MLOC	MLOC_67281.7	1649	2e-24	182 - 241	100	60 / 60	minus	ABC15129
MLOC	MLOC_67281.8	1271	2e-23	1214 - 1271	100	58 / 58	plus	ABC15129
Harvest21	ABC15129	1453	3e-25	1371 - 1430	100	60 / 60	plus	ABC15129
Harvest35	U35_21246	1453	3e-25	1371 - 1430	100	60 / 60	plus

Contig Sequence (1453 bp)

>U35_21246 1453 Hv_44K_v2
CACACGCCTCTCCTCCCGCCTCCTCATCCATTTACCAGCGCCCACCGCCGCCGTCATCAC
CACTTCTCCCCGGCTACGGAAACCCACCGCAGCATTCACCGCGTCCTACCGGAGGCGCAG
GCCACGCCTCGCCGTCTTGGCAGGGGCGGCGCCGAGCAGCGGCGCGGTCGTCCCGGCGGC
ACCGGCCGGGGAGAACAGGGGCGCCGGGCTGACGCCAGCCGAGGCGCAGCGGCTGGAGGA
GTTCCTGAAGGCCGACCTTCCGCACCTGTTCGACGACGTGGGCATCGACCGCTCCGCGTA
CGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCTACGACGACATCGACGGCTACCT
CGCCAACATACGCCTCCTCAAGATCATCTTCCGCCCCGACTTCTACCTGCACGACGTCAA
GCAGACAGGGCCCTATGAGATTACCACGAGGTGGACCATGGTCATGAAGTTCTCTCTCCT
GCCATGGAAGCCGGAGCTGGTCTTCACCGGATTGTCGATCATGGGCGTCAACCCACAGAA
TCTCAAGTTCTCCAGCCATGTGGATATTTGGGACTCAATACAGAACAATGAATACTTCTC
CTTGGAAGGATTGGTAGAAGTTTTCAAGCAGCTACGATACTACAAGACCCCAGATATAGA
AACACCAAGTTACCTCGTTCTGAAAAAGACTGCAACTTATGAGGTCAGGAAGTATCCACC
ATTTTCAGTAGTCGAAGCGAAAGGAGAAAAATTAACAGGATCATCAGGTTTTAACAATGT
TACTGGGTATATATTTGGCAAGAATGCTTCATCTGAGAAGATTGCAATGACTACACCTGT
CTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATACAGATAGCTCTGCCAAT
GAACAAAGACTTGAACAGTTTACCAGCTCCAAATACAGAAGCAGTTACCTTGCGAATGGT
TGAAGGAGGCATTGCTGCAGTGAAAAAATTCAGTGGGCGACCAGAAGAGGAAATTGTGGC
CAAGAAAGAGAAGGAGCTACGCTCCCAGCTACTCAAGGATGGGTTGAAGCCCCAACAAGG
CTGTTTGCTTGCACGTTACAATGATCCTAGCACAAAGGACTTTGTGAAGAGGAACGAGGT
GCTTATATGGCTAAACGATTTCACACTGGAGTAGTAGTCTTCACTCTTCACTGTAAATCG
TACAGCATATTTCTGCAACATCAGACACTGTATGTTGGAGCTTCCAGAGCATCGTAGAAT
GGAGAGGTTACGAGCAGATGCAATCTATGTATAGAAGATGTAAATTCCAAAAGGTAAAAT
AGGCCTGATACTAAAGTGTAGGTCATATGATTCTATTTGTACGTTAAACTAGAGTTGAAT
GTGGAATTTTGTTACGATACCATGTAAGAAGCTCTATACGTCTGTGCCGCTATTTTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_21246 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g39690.1	382	0.0	protein\|SOUL heme-binding protein, putative, expressed
Brachypodium v1_2	Bradi1g36860.1	388	0.0
Arabidopsis v10	AT5G20140.2	395	1e-144	SOUL heme-binding family protein \| chr5:6799066-6800892 REVERSE LENGTH=395