barSeed - Barley Seed Development Database

Probe CUST_21362_PI390587928

Source Contig U35_21248

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21362_PI390587928	Hv_44K_v2	TTTCTGCAATCAACTGCTAAGATGGAGGATGAAATTCCTGTTGCTGCAGTTCCCCTTTCC	877	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43313.5	2371	2e-24	868 - 927	100	60 / 60	plus	ABC16631
MLOC	MLOC_43313.7	1898	2e-24	132 - 191	100	60 / 60	plus	ABC16631
MLOC	MLOC_43313.4	2573	2e-24	1056 - 1115	100	60 / 60	plus	ABC16631
MLOC	MLOC_43313.1	1768	2e-24	945 - 1004	100	60 / 60	plus	None
MLOC	MLOC_43313.2	2548	2e-24	933 - 992	100	60 / 60	plus	ABC16631
MLOC	MLOC_43313.3	1721	2e-24	928 - 987	100	60 / 60	plus	ABC16631
JLOC1	JLOC1_27998.3	2362	8e-25	717 - 776	100	60 / 60	plus
JLOC1	JLOC1_27998.2	2573	8e-25	928 - 987	100	60 / 60	plus
JLOC1	JLOC1_27998.1	2852	8e-25	928 - 987	100	60 / 60	plus
Harvest21	ABC14518	1001	3e-25	878 - 937	100	60 / 60	plus
Harvest35	U35_21248	1001	3e-25	878 - 937	100	60 / 60	plus

Contig Sequence (1001 bp)

>U35_21248 1001 Hv_44K_v2
CAGCCCTAGTTGGCCCTCGCCTCCCCTCCCCCTCCCCTGCTAACCCTCTCCGGCGTCCTC
CGCCGGGGCGCCCTCCTCGCCTGCAACACTGCTGTCGACGTGGACCTCGCCGCCGGTGCC
CTAGGACCTCACCGCCCCCTTCCCCCGCTTCTCCCCGGCCATCTACCCGTCATCTGCAGA
AGGCCTATGGTAAGGGCAAATTGAGCTGCAAGTGGCCATTATCAGAATGGGTGAAAGTAA
CGAGAATATCCAGTTTTCATGGGGAAATAAGAGAGCAAAAGGTGGTGCCAAGATGGATAC
ACAGTTCTATGGTTCCTTCACCTTTGACAATGTGAAGTACTCACTGTATGACTGTGTATA
TCTTTTTAAAAATGGAGAACCTGAACCATACATTGGAAAGATAGTAAAGATATGGCAGCA
AAATGAAGCTAAGAAAGTAAAGATTCTTTGGTTTTTCACCCCGGATGAGATCAGAAATTA
TTTAGAAGGCCCCGTGGTGGAGAATGAGATATTTCTTGCTTCTGGTGATGGCACTGGCCT
TGCCGATATCAACCCACTGGAATCTATTGCTGGTAAATGCACAGTTGTTTGCATTTCAAA
GGATGAAAGGAATCGCCAGCCTACCCCAAAGGAACAAACGGTCGCTGATTATATCTTCTA
TAGGTTTTTTGATGTTGGAAACTGCACACTTTCTGAGCAAGTACCTGAGAAAATTGTAGG
GCTGGAAGTCAACGTGCTGCTTAATCCTGAAGCTGAGCAAGTTATATGTTACCCGGATCA
GGATGTGCAAGGCATGAATCAGAAGGTGGGTGCAGGTCTGGTTGCACCCCTTCCGCAATC
AGCGGCTAAGATGGAGGATGAAATTCCTGTTGCACCCTTTCTGCAATCAACTGCTAAGAT
GGAGGATGAAATTCCTGTTGCTGCAGTTCCCCTTTCCCAGTCAGTGGCCATTTTTCTTCC
CCCATCAGTCAAAGAGGAGGATAAAGCTCAGGTTGCTACTG

Homology of Contig U35_21248 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42460.1	502	2e-110	protein\|BAH domain containing protein, expressed
Brachypodium v1_2	Bradi1g21470.1	510	3e-126
Arabidopsis v10	AT5G11470.1	757	4e-53	bromo-adjacent homology (BAH) domain-containing protein \| chr5:3662757-3667041 REVERSE LENGTH=757