barSeed - Barley Seed Development Database

Probe CUST_21357_PI390587928

Source Contig U35_33229

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21357_PI390587928	Hv_44K_v2	TATGGAAGGCGATCAAATTCGAGTTCGAGCCGGTAGGTACTATCGATAAGAAGGTCTAAA	611	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.737	3.229	1.059	0.891	0.657	0.755
Raw	123030.333	122936.100	37819.300	49259.900	12630.953	16234.400

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04254	1408	1e-23	389 - 448	98	59 / 60	minus
Harvest21	ABC48671	305	8e-21	21 - 75	98	54 / 55	minus	ABC48671
Harvest35	U35_33229	795	3e-25	612 - 671	100	60 / 60	plus
Harvest35	U35_38001	621	1e-23	173 - 232	98	59 / 60	plus
Harvest35	U35_33140	748	1e-23	330 - 389	98	59 / 60	plus
Harvest35	U35_136	1785	1e-23	1681 - 1740	98	59 / 60	plus
Harvest35	U35_33264	640	6e-22	311 - 370	97	58 / 60	minus

Contig Sequence (795 bp)

>U35_33229 795 Hv_44K_v2
TATCACCTTTCTACTATAGTATATGTACATTATAAGCTGGCACAACGAAGGTAATTTGAT
GTAGTGGAATAGCTGAATAACGGCATAATTCTTCTCCATCTAATTAATGTTCGTTCAAGC
ACTACGGAGTAATACTAGCCCTATGTGAATAGGAAGAAACTTTGGTGTATGGTGCAATAG
CTGAAATTGTGACTAGATTGCTTCACCTATGGTTTAAGCACTAAAACCTTTGTGTGTGCC
ACTCCATGGGTTGGTTGGGATGCTCGTGCACGCCTGAGCAGCAACCTTTACCATCGTTTC
AGGAAGGATGCCGGCATTGCAGATGTTTGCAAAGGACCGCATGTGCAGCGGCCGCTCGGT
AGCTTCAGGTGGTATTCATGTTTGGCATATGCCAGCTCTGACCGAAATCTTTGGGGACGA
TTCTGTATTACAATTTGGTGGAGGAACTTTAGGACATCCTTGGGGGAATGCACCTGGTGC
AGCAGCTAATCGAGTGGCTTTAGAAGCTTGTGTACAAGCTCGTAACGAAGGGCGTGATCT
TGCTCGCGAAGGTAATGAAATTATCCGAGCAGCTTGCAAATGGAGTCCTGAACTAGCCGC
AGCTTGTGAAGTATGGAAGGCGATCAAATTCGAGTTCGAGCCGGTAGGTACTATCGATAA
GAAGGTCTAAAAAAAAATAAACAGCGGCCGCTAATCACAAAAGACTTTAGGATATAGACC
TGTACATGATTGCTTGAGAGTCAAAGAGTCGAAACCAATTTCCAACTANNAATCGTTTTC
TACGCCGTTGCTGTT

Homology of Contig U35_33229 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g21268.1	485	3e-60	protein\|ribulose bisphosphate carboxylase large chain precursor, putative, expressed
Brachypodium v1_2	Bradi3g27325.1	459	4e-63
Arabidopsis v10	ATCG00490.1	479	1e-55	\| Symbols: RBCL \| ribulose-bisphosphate carboxylases \| chrC:54958-56397 FORWARD LENGTH=479