- Probe CUST_21355_PI390587928
- Source Contig U35_45201
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_21355_PI390587928 | Hv_44K_v2 | GAAAAGAGAGGCTGTTTCTTACAAGAAGGCTGGTTATGTTGCAGAGGCCATGTCATTGCT | 62 | GeneList: ivory MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.976 | 0.856 | 1.612 | 1.200 | 1.018 | 0.842 |
Raw | 62.583 | 78.077 | 141.678 | 140.466 | 49.175 | 44.603 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC43729 | 123 | 3e-25 | 63 - 122 | 100 | 60 / 60 | plus | |
Harvest35 | U35_45201 | 123 | 3e-25 | 63 - 122 | 100 | 60 / 60 | plus |
Contig Sequence (123 bp)
>U35_45201 123 Hv_44K_v2 GACAGCCATGCACCTGTTTCTTCTTTGAATCGAGAGGCAGTAAAGGAACAAGTGCTTGCT CTGAAAAGAGAGGCTGTTTCTTACAAGAAGGCTGGTTATGTTGCAGAGGCCATGTCATTG CTT
Homology of Contig U35_45201 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |