- Probe CUST_21354_PI390587928
- Source Contig U35_45202
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21354_PI390587928 | Hv_44K_v2 | TTCATCACCTTCGGCTTCGCCTGCACGCCGCTCTACTTCGTGTGGGAGAAGCTCATCGGC | 280 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376258 | 1945 | 2e-24 | 1051 - 1110 | 100 | 60 / 60 | plus | ABC08128 ABC17639 |
| MLOC | MLOC_34872.2 | 976 | 2e-24 | 723 - 782 | 100 | 60 / 60 | plus | ABC08128 |
| MLOC | MLOC_34872.1 | 1594 | 2e-24 | 1335 - 1394 | 100 | 60 / 60 | plus | ABC08128 |
| MLOC | MLOC_34872.3 | 557 | 2e-24 | 360 - 419 | 100 | 60 / 60 | plus | ABC08128 |
| MLOC | AK372286 | 2056 | 7e-23 | 1103 - 1162 | 98 | 59 / 60 | plus | ABC08128 |
| MLOC | MLOC_59603.3 | 1196 | 7e-23 | 260 - 319 | 98 | 59 / 60 | plus | ABC08128 |
| MLOC | MLOC_59603.2 | 1264 | 7e-23 | 328 - 387 | 98 | 59 / 60 | plus | ABC08128 |
| MLOC | MLOC_59603.1 | 1329 | 7e-23 | 360 - 419 | 98 | 59 / 60 | plus | ABC08128 |
| MLOC | AK369583 | 2280 | 3e-21 | 1486 - 1545 | 97 | 58 / 60 | plus | ABC08128 |
| MLOC | MLOC_54960.1 | 4445 | 3e-21 | 2821 - 2880 | 97 | 58 / 60 | minus | ABC08128 |
| MLOC | MLOC_54960.3 | 2649 | 3e-21 | 834 - 893 | 97 | 58 / 60 | minus | ABC08128 |
| MLOC | MLOC_54960.4 | 2067 | 3e-21 | 756 - 815 | 97 | 58 / 60 | minus | ABC08128 |
| MLOC | MLOC_54960.2 | 2493 | 3e-21 | 869 - 928 | 97 | 58 / 60 | minus | ABC08128 |
| JLOC1 | JLOC1_22532.2 | 677 | 8e-25 | 418 - 477 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22532.1 | 1465 | 8e-25 | 1206 - 1265 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38802.2 | 1230 | 4e-23 | 254 - 313 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_38802.1 | 1333 | 4e-23 | 357 - 416 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35417.1 | 3006 | 2e-21 | 1972 - 2031 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC43731 | 605 | 3e-25 | 281 - 340 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC08128 | 1890 | 6e-22 | 1008 - 1067 | 97 | 58 / 60 | plus | ABC08128 |
| Harvest35 | U35_45202 | 605 | 3e-25 | 281 - 340 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31872 | 630 | 1e-23 | 446 - 505 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_2546 | 2376 | 6e-22 | 1470 - 1529 | 97 | 58 / 60 | plus |
Contig Sequence (605 bp)
>U35_45202 605 Hv_44K_v2 GCTTCAGCTGGGTCAGAGCAGAGTCCGGTCATCTCGCTCGCTGCAGGGTCGCAGTGGAAA CACCAGCCCATGGGAGGTGATGCACGCGATGTGGCGGCCGCAGAAGTTCAAGGCGATCTA CCTGATGGCGACGGCGTACGTGCTGACGCTGACGCTGCCGTCGGCGGCGAGCGTGTACTG GGCGTTCGGGGACGAGCTGCTCACGCACTCCAACGCCCTCTCGCTGCTGCCACGCACGGC GTTCCGGGACGCGGCCGTGGTGCTCATGCTCGTCCACCAGTTCATCACCTTCGGCTTCGC CTGCACGCCGCTCTACTTCGTGTGGGAGAAGCTCATCGGCCTCCACGACTGCCGCAGCCT CTGCAAGCGCGCCGCCGCGCGCCTCCCCGTCGTCGTGCCCATCTGGTTCCTCGCCATCGT CTTCCCCTTCTTCGGGCCCATCAACTCCGCCGTCGGCTCCCTCCTCGTCAGCTTCACCGT CTACATCATCCCGGCGCTGGCGCACATGATCACCTACCGCTCCGCACACGCCCGAGAGAA CGCCGTGGAGCAGCCGCCGCGGTTCGTGGGGCGATGGACGGGCACGTACGTGATCAACGC GTTCG
Homology of Contig U35_45202 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g14080.1 | 525 | 2e-117 | protein|transmembrane amino acid transporter protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g68350.1 | 526 | 2e-119 | |
| Arabidopsis v10 | AT2G21050.1 | 483 | 7e-106 | | Symbols: LAX2 | like AUXIN RESISTANT 2 | chr2:9034289-9036439 FORWARD LENGTH=483 |