- Probe CUST_21352_PI390587928
- Source Contig U35_45205
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21352_PI390587928 | Hv_44K_v2 | TATCGCAGCAACAACCAACTATTCAGCTATATCTCCAACAACAACTGAATCCGTGCAAGG | 491 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.011 | 0.300 | 1.878 | 2.682 | 3.362 |
| Raw | 2.797 | 4.869 | 232.298 | 2170.107 | 1100.585 | 1531.860 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_31161.1 | 253 | 6e-21 | 25 - 77 | 100 | 53 / 53 | minus | |
| Harvest21 | ABC43735 | 571 | 3e-25 | 492 - 551 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43786 | 601 | 2e-21 | 207 - 259 | 100 | 53 / 53 | plus | |
| Harvest21 | ABC32500 | 623 | 2e-21 | 391 - 443 | 100 | 53 / 53 | plus | |
| Harvest21 | ABC00817 | 1613 | 2e-21 | 827 - 879 | 100 | 53 / 53 | plus | ABC00817 |
| Harvest21 | ABC00557 | 617 | 2e-21 | 387 - 439 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_45205 | 571 | 3e-25 | 492 - 551 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45222 | 601 | 2e-21 | 207 - 259 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_36975 | 623 | 2e-21 | 391 - 443 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_228 | 708 | 2e-21 | 372 - 424 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_216 | 617 | 2e-21 | 387 - 439 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_22 | 1147 | 2e-21 | 503 - 555 | 100 | 53 / 53 | plus |
Contig Sequence (571 bp)
>U35_45205 571 Hv_44K_v2 AACCATTTCCGCAACAACCACCATTTTGGCAACAACAACCAATTCTATCGCAGCAACAAC CATGTACACCACAACAAACACCGACTCCCACAAAGACAACAAGATCAAATGCTTGTGCAA GTACAAATACCATTTGTTCATCCATCTATTTTGCAGCAGCTAAACCCATGCAAGGTATTC CTCCAGCAGCAGTGCAGCCCTGTGGCAATGTCACAACGTATTGCAAGGACACAAATGTTG CAACAGAGCAGTTGCCATGTGTTGCAGCAACAATGTTGCCAACAACTGCCGCAAATCCCA CGAACAACTCCGCCATGAGGCAGTCCGTGCAATCGTATACTCTATCGTCCTGCAAGAACA ATCCCTACAATTGGTCCAAGGTGTCTCCCAACCCCAACAACAGTCACAACCACAACCATT TCCACAACAACCCTTCCCATCACAACAACCATTTCCACAACAACCACCATTTTGGCAACA ACAACCAATTCTATCGCAGCAACAACCAACTATTCAGCTATATCTCCAACAACAACTGAA TCCGTGCAAGGAGTTTCTCTTGCAACAGTGC
Homology of Contig U35_45205 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |