barSeed - Barley Seed Development Database

Probe CUST_21347_PI390587928

Source Contig U35_21252

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21347_PI390587928	Hv_44K_v2	CTTGTGTTTCTCTCACTGAACTGCTGCTGCTATGTGCTATGCAAACACTACGTATGGAAA	869	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.420	3.429	1.240	0.686	0.294	0.330
Raw	1080.555	1783.600	538.036	482.506	70.711	87.612

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62183.2	2252	2e-24	2 - 61	100	60 / 60	minus	None
MLOC	MLOC_62183.1	2407	2e-24	37 - 96	100	60 / 60	minus	None
MLOC	MLOC_62183.3	2488	2e-24	2 - 61	100	60 / 60	minus	None
JLOC1	JLOC1_40672.2	2558	8e-25	2266 - 2325	100	60 / 60	plus
JLOC1	JLOC1_40672.1	2456	8e-25	2164 - 2223	100	60 / 60	plus
Harvest35	U35_21252	958	3e-25	870 - 929	100	60 / 60	plus

Contig Sequence (958 bp)

>U35_21252 958 Hv_44K_v2
TGACCCCTCTGGCAGACCAAACTCATACCAGCAGGCAATTTTTGGGGCCAGCGAAGTTCT
ACAGTTTTATGACAATGATAGACGATTCCCTGCATGGGGTTTTGGTGCAAAGATACCACG
AGGATCTGTATCCCACTGTTTCAACTTGAATGCAAGCACCAATGACTGTGAGGTCGTTGG
AGTTGAAGGCATCATGTCAGCGTACTCCTCTACACTTTACAGTGTTTCTCTCGCGGGGCC
AACCTTGTTTGGGCCCGTGATCAGCAAAGCTGCAGAAATTGCCAGCCATTCTGTGCAATA
TGGAAACAACAAATATTTTGTCCTGCTCATTATCACGGATGGAGTTATCACGGACGAGCA
AGAAACAAAAGATTCTATTGTAAGGGCATCAGACTTGCCGTTGTCGATTCTCATCGTGGG
AGTCGGGAATGCTGATTTCACTCAAATGAGGATCCTGGATGCGGACAACGGCAAGCGGCT
TGAGAGCTCAACGGGCAGGGTGGCGACGCGTGACATCGTCCAGTTCGTCCCCATGAGGGA
AGTCCAAGCAGGTGGGCAGGTGACGGTTGTCCAGAGCCTGCTGGAGGAGCTGCCCGGGCA
GTTCCTGGAGTACATGCGCAGCCGGGACATGAAGCCGCGGCCGCCCCAGCACGCCTCGGC
GCCGCCAGCCTACCCCCCTCCTCCTCCCCAGCTGTGAAGGAACCCCGCCACCCCACCCCC
ACGAGCTGGGCTGCGCCTACGTACCAGCTGGCAATTGTAGATTCTCCCGTCTATCTGTCT
GACTAATAGGTACTGAACCCCGACGATAGGTTTTCCACCCAGGTTTAGGACGTCGCTGCA
AACACTACGTATGGAAAATGAGATGCCTCCTTGTGTTTCTCTCACTGAACTGCTGCTGCT
ATGTGCTATGCAAACACTACGTATGGAAAAAAAAAAAACAACAAAAAAAGCTCGAGGG

Homology of Contig U35_21252 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g30970.1	597	3e-127	protein\|copine, putative, expressed
Brachypodium v1_2	Bradi2g27267.1	592	2e-129
Arabidopsis v10	AT5G61900.1	578	8e-92	\| Symbols: BON1, CPN1, BON \| Calcium-dependent phospholipid-binding Copine family protein \| chr5:24855908-24859150 REVERSE LENGTH=578