barSeed - Barley Seed Development Database

Probe CUST_21343_PI390587928

Source Contig U35_7360

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21343_PI390587928	Hv_44K_v2	CATGTATGAAACGATGTGTGAGTGTAACAAGAGGGGGAATGATGGATTGTCGTCAAAAAA	428	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.690	5.347	0.886	0.421	0.942	0.839
Raw	35.021	58.714	7.769	4.833	3.422	3.429

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_7360	497	3e-25	429 - 488	100	60 / 60	plus

Contig Sequence (497 bp)

>U35_7360 497 Hv_44K_v2
AGTGCAGCAGCGGCAACCTCGGCGGCGGCATGGACGTGGACATGTCCATCAAGATCGACG
GCTGCGTCACCGTGCTCGTCAAGCACCTCCAGTGGAAGTTCAGGGGCAACGACTGCATCT
CCATCAACAAGATGAAGGTGCAGGTCTACTGGGACGCCCACGACTGGCTCTTCGGCACCG
GCATGCGCCAGGCCCTCTTCATTTTCAAGCCCCAGGCCCCCTCACCCTCGCCGTCGTCCG
ACGCCGACACCGACGCCGACGAGTTCTCCGATTTCTGCCTCTTTCTCTACGCATGGAAGA
TCGAATGAGCTAAGTTAGCTAGCTAGGCGCCCGTACCCTACCTGCATTCGTTAATTTGTT
GCTGCCGCCACATTACAGAGCGGATGATGGACATTTCACCATGTTATGAGCAACATACTA
GTACCATGCATGTATGAAACGATGTGTGAGTGTAACAAGAGGGGGAATGATGGATTGTCG
TCAAAAAAAAAAAAAAA

Homology of Contig U35_7360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None