barSeed - Barley Seed Development Database

Probe CUST_21341_PI390587928

Source Contig U35_7362

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21341_PI390587928	Hv_44K_v2	AGTGTACAGTATGAATGAGCATCAGGTCAGGTCAATTAACTTATTATTGTTGTCAGTTAG	396	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362285	3902	2e-24	3790 - 3849	100	60 / 60	plus	ABC07960 ABC24913
MLOC	MLOC_4921.2	3362	2e-24	3217 - 3276	100	60 / 60	plus	ABC07960 ABC24913
Harvest21	ABC24913	513	3e-25	397 - 456	100	60 / 60	plus	ABC24913
Harvest35	U35_7362	546	3e-25	397 - 456	100	60 / 60	plus

Contig Sequence (546 bp)

>U35_7362 546 Hv_44K_v2
TTTATGTAGCTATGTTGAAAGCATGTACATACATGAGCAATGGCTGCTATTGGAGCGGGG
CTACAGTAGAAGGAAGTGTAGGCATTAGATGAAGAAGGGACCGTGGGGCTACAGTACAAG
GAAGTGTAGGCATCAGATGAAGAAGGGACCGTGACCGTCATAGTGAGAGTAACAGCAACA
GCAACGGAGGGATGCAAATCTGATTGATGCCTTGATGCTTGTGGTAGGTCAACAACAGCA
CAGCTGACATGGCCTGCTCCAAGCACATCACCATCCAAAGGAGATAGATTTGTATTTGTA
GCTCTATCATGTTCGGCTCGGGTCAGGCTGTCTGTCGTTTTCAGTCAATTATTATTGAGA
ATCTTGGTTTAGATTGCGAGTTGTAGATCCTGTGCAAGTGTACAGTATGAATGAGCATCA
GGTCAGGTCAATTAACTTATTATTGTTGTCAGTTAGGAAATATTCATTTTATCTTACTAT
AACCAGAATAATTTACAACTTGGTCTCGTAATCATCTTTGATGCTTTGGAAAAAAAAAAA
AAAAAA

Homology of Contig U35_7362 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None