barSeed - Barley Seed Development Database

Probe CUST_21336_PI390587928

Source Contig U35_7367

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21336_PI390587928	Hv_44K_v2	TACAGTACAATGCCTGTACAACAAGAGTGGTTGCCAATGGCAAGGAAACCTGTCTGAATG	492	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61166.5	4125	2e-24	541 - 600	100	60 / 60	plus	ABC15200
MLOC	MLOC_61166.8	4083	2e-24	515 - 574	100	60 / 60	plus	ABC15200
MLOC	MLOC_61166.3	3905	2e-24	321 - 380	100	60 / 60	plus	ABC15200
MLOC	MLOC_61166.2	3789	2e-24	333 - 392	100	60 / 60	plus	ABC15200 ABC29988
MLOC	MLOC_61166.6	3977	2e-24	541 - 600	100	60 / 60	plus	ABC15200
MLOC	MLOC_61166.1	4014	2e-24	346 - 405	100	60 / 60	plus	ABC15200
MLOC	MLOC_61166.7	4243	2e-24	541 - 600	100	60 / 60	plus	ABC15200
MLOC	MLOC_61166.4	4133	2e-24	541 - 600	100	60 / 60	plus	ABC15200 ABC29988
JLOC1	JLOC1_39956.3	4013	8e-25	533 - 592	100	60 / 60	plus
JLOC1	JLOC1_39956.2	4164	8e-25	534 - 593	100	60 / 60	plus
JLOC1	JLOC1_39956.1	4215	8e-25	547 - 606	100	60 / 60	plus
Harvest21	ABC39211	547	3e-25	455 - 514	100	60 / 60	plus
Harvest35	U35_32410	534	3e-25	341 - 400	100	60 / 60	plus
Harvest35	U35_7367	585	3e-25	493 - 552	100	60 / 60	plus

Contig Sequence (585 bp)

>U35_7367 585 Hv_44K_v2
ACAGCACCGTCCCGGGGTCCGTCGCCGCCGAAACCCCTCCCCTCTTCTTCCTCCTCCTCC
ACCACCATCACCACCACCTACACCAAAGTGCGCCTGCCTTCTCGAAACGTAGCAACTAGT
TTGTCTCGCGATCTCCCTCCCCGACCCCTTGTCCTGCTGCTGGGCTGGTGTGGCCGGGAG
GCGATTCTCTCTGCCGGCATCAGAACCCTTACTGGATAGAAGTTAGTGAGGCCGGACAAT
GGGTTTCGATAATGAATGTATTCTGAATATACAAACTCTTCCTGGTGAATATTTTTGCCC
TGTTTGTCGGACACTCATATACCCCAACGAAGCTCTGCAAGCTCAGTGCACACATCTCTA
CTGCAAACCTTGCTTGGCTTATGTAGCAGCAACCACACAAGCCTGCCCTTATGATGGTTA
CTTAGTGACGGAAGCTGATTCCAAGCCTCTGGTGGATTCAAATAAATCACTTGCTGAGAC
AATTGGTAAAGTTACAGTACAATGCCTGTACAACAAGAGTGGTTGCCAATGGCAAGGAAA
CCTGTCTGAATGCAACACACATGGTACCGCTTGCGCCTATGGGAA

Homology of Contig U35_7367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g42217.1	1162	3e-71
Arabidopsis v10	None