barSeed - Barley Seed Development Database

Probe CUST_21318_PI390587928

Source Contig U35_7387

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21318_PI390587928	Hv_44K_v2	CGTGTGACCAAATTTTGTTATGAAGAATGCATTCAAACGCTTTTTACAAACGAGCAGAGG	865	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.306	1.729	1.168	0.748	0.334	0.381
Raw	1398.833	1674.998	973.470	978.838	153.865	193.159

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48709.1	3123	2e-24	112 - 171	100	60 / 60	minus	ABC15436
JLOC1	JLOC1_31254.1	3183	8e-25	2956 - 3015	100	60 / 60	plus
Harvest21	ABC15436	955	3e-25	866 - 925	100	60 / 60	plus	ABC15436
Harvest35	U35_7387	955	3e-25	866 - 925	100	60 / 60	plus

Contig Sequence (955 bp)

>U35_7387 955 Hv_44K_v2
GGATCCATGGCAAATCGTGGAAGACCCATAGCTCGGACAAAATGTGTGAAATTTGCTCCA
ACAGGAAGATCTTTTGCTGCAGCGACCACTGATGGTGTTCTGTTGTACTCAGTTGATGAA
TCATTTATCTTCGACCCAACAGATCTTGACATTGATGTTACTCCTGAGAAAGTGGAGGAA
GCTCTTGCAGAAAACCAACAACAGAGAGCCCTTTTACTGAGCCTCCGGTTAAACGAAGAC
TCCTTGATTAAGCAATGCATCTTTGCTGTGGATCCATCCAATGTACGAGCAATCTGCTCA
TCAGTACCCTTTAAGTATCTTCAGAGATTGATCGATGCATTCGCTGACCTCCTGGAAAGC
TGTCCCCATCTGGAATTCATCCTTCTGTGGTCTCAGGAGCTATGCAAGGTTGATGGAAGC
TACATCCAGCAAAATTCGAGGACTTTGCTTCCTGCTCTCAAGTCGTTGCAGAAGTCTATA
ACAAAACTACACCAGGATCTGGCGGACACTTGTTCCTCCAACGAGTACATGCTCAAATAT
CTGAGCTCTGCTGGGACAAAGAGTTAGGCCATGGTCGGCACTTGTTTCTGGTTGTTATAA
CACCAAGGTGATGACTGAGCACATGAGCAGCTGAGTTTCATTTTTTAATGCCAACCAGTG
TTTGGCCGGCCGAATATGCACTCTTGCGATCGTTATCCACATGGGCAGTGGCTGTATGCT
GGTTAAGCAGTATGTTTGATGTTGAGGGCTGAAGTTGAGCTGAGGACGGTTGGCATTTTT
GTCTGGCGAGGAAGGAAGGATTGCCTCTTGGACCACGAAGTGGGTTAGCTACTCTCTTGA
GGTTGTGTGTTTGTACCCGTCCGTCCGTGTGACCAAATTTTGTTATGAAGAATGCATTCA
AACGCTTTTTACAAACGAGCAGAGGTATTATATATGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_7387 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g44320.1	889	9e-101	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi2g19560.1	882	4e-107
Arabidopsis v10	AT1G15440.1	900	2e-73	\| Symbols: PWP2, ATPWP2 \| periodic tryptophan protein 2 \| chr1:5306159-5309460 REVERSE LENGTH=900