barSeed - Barley Seed Development Database

Probe CUST_21317_PI390587928

Source Contig U35_7388

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21317_PI390587928	Hv_44K_v2	CTGGCTCTGGCATCCTGGAGGTGAAGGCCTACTTGAACGGTGTCGATGCACCAAACATTT	685	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81360.10	1471	2e-24	1262 - 1321	100	60 / 60	plus	ABC39895
MLOC	MLOC_81360.9	1299	2e-24	1096 - 1155	100	60 / 60	plus	None
MLOC	MLOC_81360.3	1555	2e-24	1346 - 1405	100	60 / 60	plus	ABC39895
MLOC	MLOC_81360.4	691	2e-24	482 - 541	100	60 / 60	plus	ABC39895
MLOC	MLOC_81360.2	1510	2e-24	1189 - 1248	100	60 / 60	plus	None
MLOC	MLOC_81360.7	1439	2e-24	466 - 525	100	60 / 60	plus	None
MLOC	MLOC_81360.5	1049	2e-24	840 - 899	100	60 / 60	plus	ABC39895
MLOC	MLOC_81360.8	1465	2e-24	1257 - 1316	100	60 / 60	plus	ABC39895
MLOC	MLOC_81360.6	1758	2e-24	1330 - 1389	100	60 / 60	plus	None
JLOC1	JLOC1_54124.5	1489	8e-25	1199 - 1258	100	60 / 60	plus
JLOC1	JLOC1_54124.4	918	8e-25	709 - 768	100	60 / 60	plus
JLOC1	JLOC1_54124.3	1267	8e-25	1058 - 1117	100	60 / 60	plus
JLOC1	JLOC1_54124.2	667	8e-25	458 - 517	100	60 / 60	plus
Harvest21	ABC39894	418	3e-25	359 - 418	100	60 / 60	plus
Harvest21	ABC39895	394	6e-22	318 - 377	97	58 / 60	minus	ABC39895
Harvest35	U35_7388	745	3e-25	686 - 745	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_7388 745 Hv_44K_v2
CCTCATCCCTCCCTCCCTCCCAGATCCGATCCATTGGCGCCGCCCAGCTCGCCTCGGCGA
CCGGGAGCCCGAGTTCCTCGGCGAGCCCGTCCCCACCGACGAGGACCGTGCCAAGTGGCC
GTCGCTGCTACCTTGTCTTCCCTTCCGCCTGTGGTTCTGGAGCTCGACCCGCCGGCGTCA
CCATCCTCCTCCGGCCGTCCACGATGGACATACTCGAGCTCCAGAATACCTCCTTCCCGT
CCGCCCAGGAGAAGAAGCGGCGGCCGCCCAAGGAGCCGCATCGCAAGCCCGATGGCGTCT
CGCGCGAGGTGTACGCGCTCACCGGAGGGGTGGGAATGGTGCCGCTCATGCCCACCATTT
TCCACAGCGCGAGGGGCCCGGCCGCAATATTATACGGACCGGCGGCCCTCGGTTGCAAGA
AAAACAAATGACGACGGAGAATTACTCCCTGGTCTCCCCTTTGCTCCTTCGTTCACACCT
TCCGCTAAGCTGGTCGCCGCTGGTGCGGGGGGGCGGGGGCGACCGTCGTCCGTCCGTCGC
CTTCGAGCAAAGCTTGCGGCCGCGGTTCCGGCTTCATCGCGCGCCGCCCCGAGGTTCGAA
TCGGCGTTCCTGGTCTTCCTATGTTTGAATCTCCTGCTCACCATGTTCGCCACGGTGCTG
ACGGTGTACGTGGCGCCCGCGGCGGCTGGCTCTGGCATCCTGGAGGTGAAGGCCTACTTG
AACGGTGTCGATGCACCAAACATTT

Homology of Contig U35_7388 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None