barSeed - Barley Seed Development Database

Probe CUST_21314_PI390587928

Source Contig U35_7391

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21314_PI390587928	Hv_44K_v2	CACCAAGACCAGACCAATCTACTAATCTCAGTTATTTGGAGATGCTAAATAGTATTATAG	454	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249371.1	1366	2e-24	1292 - 1351	100	60 / 60	plus	ABC17800 ABC17801
MLOC	MLOC_59390.1	1553	2e-24	1413 - 1472	100	60 / 60	plus	ABC17800 ABC17801
JLOC1	JLOC1_38649.1	1683	8e-25	1419 - 1478	100	60 / 60	plus
Harvest21	ABC17800	620	3e-25	107 - 166	100	60 / 60	minus	ABC17800
Harvest35	U35_7391	620	3e-25	455 - 514	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_7391 620 Hv_44K_v2
AGCAGCTGTTCCATGGGGTCCAGCAGCATTTCCAGTCCCAGCAATTGGATGAGTTGCAGG
TGATCCTGGGGTTCATCCAGACGGCAAAGAGGCTCAAGACCCTGTACAACAACTCCTCCT
GCTAGCCTTCATCTTCATCTGCATAATATGCTTCATCTTCGCCTTCAGCTTCACCGGTTG
TTAGTAGATGTCAAGAAGAGAAGAGAAGAGAAGAGGTTAGATGATGATGCATCATGTCAT
GTGGTTAAGAAAGTAAGTAAGTAAGTTAATGGTAGTCTCCTCCTTGAGAAGTTATGAAGA
GAGAGGGAGGGAGGGAAGCGATTTCTACTGGCACATTTGATCAGTACAAATTCTTCTTCT
TTAGCTTCTTCTTCTTGTTACTCCTTGTAATGATGAGATAGAGAGGGAGAGGGAGAGGGA
GAGCGAGATGCTGCTGCTGTTTGTTGTGACTGACCACCAAGACCAGACCAATCTACTAAT
CTCAGTTATTTGGAGATGCTAAATAGTATTATAGTTAATTAATTATGTGAAGAAGCTATT
CTATGGATGGATTTTTTTGTTTTTGTTTTTGGAAAGAGCAAGCTATGGATGGATGGATGA
ATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None