barSeed - Barley Seed Development Database

Probe CUST_21306_PI390587928

Source Contig U35_12400

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21306_PI390587928	Hv_44K_v2	CAGCACTGGTGCTTTGCAAGTATAAAATAAAATGCTGTCACAGTTGAGCTTCATTATTTT	336	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.294	1.345	1.063	0.918	0.286	0.291
Raw	375.559	641.761	428.092	605.138	63.344	70.523

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14248.2	3090	2e-24	2890 - 2949	100	60 / 60	plus	None
MLOC	MLOC_14249.4	5151	2e-24	3439 - 3498	100	60 / 60	plus	None
MLOC	MLOC_14249.3	5017	2e-24	3439 - 3498	100	60 / 60	plus	None
MLOC	MLOC_14248.4	3245	2e-24	2702 - 2761	100	60 / 60	plus	None
MLOC	MLOC_14248.1	3854	2e-24	3311 - 3370	100	60 / 60	plus	None
JLOC1	JLOC1_9720.4	2158	8e-25	1478 - 1537	100	60 / 60	minus
JLOC1	JLOC1_9720.3	2161	8e-25	1481 - 1540	100	60 / 60	minus
Harvest35	U35_12400	532	3e-25	337 - 396	100	60 / 60	plus

Contig Sequence (532 bp)

>U35_12400 532 Hv_44K_v2
AGTGCTGTGATCCTCATCAGAAACTGATAAAGTGGTGCGCTATCACCCTCCCACCTTGTC
AGATGATGAGTCTTCTGATGGTGAAACTCATGTGGTAGATGAACAAGCAGGAAAAGATTC
GGATGCTGAATTTTCCGAGGATGAAAATCATACAGCAAGCCAACAAGCAAGAAGAGACCC
ATCGCGGAGCTCGCTCGTTGATATTATTGCCTCATGGGAAACAGGTGGTTCACCGCCAAG
AAATTTCAAGGCGGAATGCTCTCGAACGAATAAACATTATCGTCTGTGTTATCGTCCTTC
TGCCAAGCAGCAGCAGCAACACTCGTGATGTCAAGTCAGCACTGGTGCTTTGCAAGTATA
AAATAAAATGCTGTCACAGTTGAGCTTCATTATTTTGTGTTCTCTCATTTATTTTTCATT
GCCATTATTAACAAAAACACGTTTCTGCTATGCACTAGATGATGGTCTTTTGTAATTATG
CTAAACATATAAAACCATATAATTTTTTCATGGCAGAAAAAAAAAAAAAAAA

Homology of Contig U35_12400 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None