barSeed - Barley Seed Development Database

Probe CUST_21303_PI390587928

Source Contig U35_12403

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21303_PI390587928	Hv_44K_v2	ATCACTAATTACATTCGCCGGAAATCCTGCTCCGCTGCTAGAATTATGTGATGGTGATCC	646	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252415.1	4121	2e-24	2295 - 2354	100	60 / 60	plus	ABC12140
MLOC	MLOC_36630.1	3498	2e-24	2225 - 2284	100	60 / 60	minus	ABC12140
MLOC	MLOC_36630.2	3239	2e-24	2002 - 2061	100	60 / 60	minus	ABC12140
MLOC	MLOC_36630.3	3132	2e-24	1849 - 1908	100	60 / 60	minus	ABC12140
JLOC1	JLOC1_23611.2	3467	8e-25	1226 - 1285	100	60 / 60	plus
JLOC1	JLOC1_23611.1	3460	8e-25	1219 - 1278	100	60 / 60	plus
Harvest21	ABC24347	708	3e-25	647 - 706	100	60 / 60	plus
Harvest35	U35_12403	708	3e-25	647 - 706	100	60 / 60	plus

Contig Sequence (708 bp)

>U35_12403 708 Hv_44K_v2
GTTTTCTTTCAGTTGGAAATTTGGCTGAATTATATGATTCAGTTGATGGTTCAGGTTTTG
GTCCACATTCAAAAGTTTCTCCCAACAAATCGTCTTCTAACTTGATGACAAGAACTATGT
CTGGGCCAGCAACCTCTGAGACTTCTCTACCAGTTGATCGGCCCATGAGATTGTCAGAAA
TTCATGTTGCTGCTGAGCATGCATTGAAACAGACGATATCTGATCCTGACTTTATGACGT
CACTTTCATCACCAGAAGAATTTGAGAATAGATATATGGAGCTTACTAAAGGCGCAGCTG
ACAATTATCACCGCTCTTGGTGGAAAAGACATGGAGTTGTGCTTGATGGAGAGATTGCAG
CTATATATTTTAAGCATGGGAATTATGATTTGGCTGCAAAATCCTATGAAAAAGTGTGTG
CTCTCTATTCTGCAGAAGGCTGGGAAGAGCTGTTGGCAGATGTTCTTCCTGATCTTGCAG
AATGCCAGAAGATTCTTAATGACGAAGCTGGTTATCTGGCTTCCTGTGTGAAGTTACTTT
CTATTGAGAGTAGCTTGTTTTCATCTAAAGAGCGGCAAGCTTTCCAGTCAGAGGTTGTTC
GGCTTGCTCACAGTGAAATGAGCCATCCTGTACCCCTTGATGTTTCATCACTAATTACAT
TCGCCGGAAATCCTGCTCCGCTGCTAGAATTATGTGATGGTGATCCCG

Homology of Contig U35_12403 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g36760.1	1246	5e-140	protein\|expressed protein
Brachypodium v1_2	Bradi4g05110.2	1246	1e-148
Arabidopsis v10	AT5G54440.1	1259	1e-99	\| Symbols: CLUB, AtTRS130 \| CLUB \| chr5:22100056-22107695 FORWARD LENGTH=1259