barSeed - Barley Seed Development Database

Probe CUST_2129_PI390587928

Source Contig U35_23001

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2129_PI390587928	Hv_44K_v2	GACAAGATACAAGCGACAATCACCTTTGCACAAAGCTCGACTCTGCCAGCCACACGCCAT	22	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72503.1	2866	7e-23	2690 - 2749	98	59 / 60	minus	ABC40836
JLOC1	JLOC1_48223.1	627	4e-23	551 - 610	98	59 / 60	minus
JLOC1	JLOC1_48224.1	2926	4e-23	228 - 287	98	59 / 60	plus
Harvest35	U35_23001	481	3e-25	23 - 82	100	60 / 60	plus

Contig Sequence (481 bp)

>U35_23001 481 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGCGACAAGATACAAGCGACAATCACCTTTGCACAAAGCTC
GACTCTGCCAGCCACACGCCATCACACCGATCATGGAGCCCGGCCGCGAGCCCACCGGCA
CGGTCGTCTTCGCCTCCGTCGGGGTCACCAGCTTCGGCTTCGACGTCTTCTCCGTCGCCG
TCCCGCAGACTCCCGAGAGCGTGTCCGCAGCGGGGCTGGCGGAGCGCCGCCACACCGACG
GCGTCTCCGTCAACTTCAACGCCCAGTTCGCGGACGACGTCGGCGAGGAGGTGGCGTTCG
TGTCCGAGCGGACCGGCTCGGCGGGCCTGTTCCTATGCCGCCCCGAGTCCGAGCGCGCCG
TGCCGCTGCCGGTCGTTGAGGGGAGCCTGTTCCACGACCGCCCCGCCGTGAGGGGCGGGC
GGCTGTATTTCGTCTCCTCGCACGAGAAGCCGGCCGCGTGGTTCAGGAGCTGGGCGGCCG
A

Homology of Contig U35_23001 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44410.1	660	1e-54	protein\|WD40-like Beta Propeller Repeat family protein, expressed
Brachypodium v1_2	Bradi1g20050.1	675	8e-57
Arabidopsis v10	None