- Probe CUST_21292_PI390587928
- Source Contig U35_12415
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21292_PI390587928 | Hv_44K_v2 | AGGCCAATGAAGCAGATGAGGATGCTATGCAAACGATACACGGTATGGTTGAAGAGAGAA | 620 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.054 | 1.838 | 1.168 | 0.660 | 0.305 | 0.309 |
| Raw | 179.539 | 153.015 | 94.589 | 75.380 | 14.289 | 14.784 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59304.2 | 2090 | 2e-24 | 1354 - 1413 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59304.6 | 3040 | 2e-24 | 1610 - 1669 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59304.9 | 2234 | 2e-24 | 407 - 466 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59304.5 | 2795 | 2e-24 | 1365 - 1424 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59304.4 | 3925 | 2e-24 | 2505 - 2564 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59304.7 | 2918 | 2e-24 | 1488 - 1547 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59304.8 | 3127 | 2e-24 | 1697 - 1756 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59304.3 | 2464 | 2e-24 | 1373 - 1432 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_38585.14 | 2988 | 8e-25 | 1358 - 1417 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.13 | 2767 | 8e-25 | 1422 - 1481 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.12 | 2856 | 8e-25 | 1430 - 1489 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.11 | 2677 | 8e-25 | 1332 - 1391 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.10 | 2892 | 8e-25 | 1466 - 1525 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.9 | 3683 | 8e-25 | 2257 - 2316 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.8 | 2759 | 8e-25 | 1333 - 1392 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.7 | 2886 | 8e-25 | 1460 - 1519 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.6 | 3034 | 8e-25 | 1608 - 1667 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.5 | 2794 | 8e-25 | 1368 - 1427 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.4 | 2960 | 8e-25 | 1615 - 1674 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.3 | 3855 | 8e-25 | 2510 - 2569 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.2 | 3849 | 8e-25 | 2423 - 2482 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.1 | 2702 | 8e-25 | 1357 - 1416 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC24590 | 738 | 3e-25 | 621 - 680 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_12415 | 738 | 3e-25 | 621 - 680 | 100 | 60 / 60 | plus |
Contig Sequence (738 bp)
>U35_12415 738 Hv_44K_v2 GGCCATGACTAGACCACCTATCACACCTGTTCCTCCAGCTAACGTTTTTGGTCCTGGAGC CGTGACTAGACCATCTATCGCACCTGTTCCTCCGGCTAACGTTTTTGGTCATGGAGCCAT GACTAGACGACCTATCACACCTGTTCCTCCAGTTACTGATTTTGGTCCTGAAGCCGTGAC TAGATCTCCTATTACACCTGTTCCTTCAGCTACTGATTTTGGTCCTGAAGCCGTGACTAG ATCTCCTATTACACCTGTTCCTCCAGCTACTGATTTTGGTCCTGAAGCCGTGACTAGATC TCCTATTGCACCTGTTCCTCCAGCTAATGAGCCACAATTTAAAGTATATGTTGGCAAGAT TGCATCAACGGTGGAAAATGATTTTGTTCTTTCTCTTCTTCAGATCTGTGGGCATGTAAA AAGTTGGAATCCAGTCACAAATCCAATTGATGGAACTTGTACTGGGTTTGGCTTTTGTGA TTTTGAATCTGCCGAAGGCTGCCTTCGTGCATGGCGGTTGCTCAACAAGCTGAGTATTGA TGGTCAAGAGCTGTTGCTTAATGTCAATGAAGCCACGAGAGAGCACCTTCAGAAATATGG TCAGAATAGTACAGAAGAGAAGGCCAATGAAGCAGATGAGGATGCTATGCAAACGATACA CGGTATGGTTGAAGAGAGAATGANGAGTAAACTTCCGGGGTCACCAATCCCGCCCGTTCA GGTATCTGCAAGCATCGC
Homology of Contig U35_12415 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |