barSeed - Barley Seed Development Database

Probe CUST_2128_PI390587928

Source Contig U35_26994

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2128_PI390587928	Hv_44K_v2	CTCGAAAAGCTGAGGAACAAGAGGATGGTCTTCGTGGGCGACTCAATCAACAGGAACCAA	483	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251964.1	1548	2e-24	488 - 547	100	60 / 60	plus	ABC14278
MLOC	MLOC_51715.1	1855	2e-24	975 - 1034	100	60 / 60	minus	ABC14278
JLOC1	JLOC1_33056.3	2134	8e-25	815 - 874	100	60 / 60	plus
JLOC1	JLOC1_33056.2	1862	8e-25	543 - 602	100	60 / 60	plus
JLOC1	JLOC1_33056.1	1611	8e-25	292 - 351	100	60 / 60	plus
Harvest21	ABC38904	571	3e-25	472 - 531	100	60 / 60	plus
Harvest35	U35_26994	583	3e-25	484 - 543	100	60 / 60	plus

Contig Sequence (583 bp)

>U35_26994 583 Hv_44K_v2
CAGCCGATTCACCAGAGAAAATGAAGCCGGAGCAGGCCACCCACAACAAGATGGCGACGG
CGACGTCCTCCCCGTCTCCTGTGCTCGGCCTGCGGGGCGTGGTGAGCTCCCTCGTCGCCT
TCTTCATCGTCGTCAGCTCCGTCTCCCTGCTCTTCGACCGCGGCCACGAGTCGCAGGTGC
AGCTGGCGGTCCAGCACCGGCACCAGGAGGTGAAGGTGGCCGCGGCGGGGCGCCGCGACG
CGCAGGTGCAGTGGACGGACGAGCTCATGGGCGAGGCCGTGAGGGGCTCCGGGGAGGAGT
GCAACTGGTCCTTGGGACGGTGGGTGTACGACAACGCCTCCCAGCCGCTCTACTCCGGCC
TCAACTGCTCCTTCATCTTCGACGAGGTCGCCTGCGAGAAGTACGGCCGGAATGATACCA
GGTACCAGCATTGGAGATGGCAGCCCGATGGATGTGATCTTCCAGGTTCACGCCACCAAA
CTGCTCGAAAAGCTGAGGAACAAGAGGATGGTCTTCGTGGGCGACTCAATCAACAGGAAC
CAANGGGTCTCCATGGTTTGCATGGTGGAGGCCTCCATCCCTG

Homology of Contig U35_26994 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g01560.1	503	3e-57	protein\|PMR5, putative, expressed
Brachypodium v1_2	Bradi4g44860.1	495	8e-65
Arabidopsis v10	None