- Probe CUST_21282_PI390587928
- Source Contig U35_12429
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21282_PI390587928 | Hv_44K_v2 | ACAGGGGTGAGCGTCAAGGTTGCAATAAAATGGGTTAGCATCAATGCAGTTGAACGACAT | 324 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.398 | 2.422 | 1.274 | 0.565 | 0.089 | 0.042 |
| Raw | 592.245 | 1675.222 | 740.938 | 536.145 | 29.353 | 14.992 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_74802.1 | 675 | 2e-24 | 259 - 318 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_49870.1 | 633 | 8e-25 | 242 - 301 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC25853 | 385 | 3e-25 | 325 - 384 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_12429 | 386 | 3e-25 | 325 - 384 | 100 | 60 / 60 | plus |
Contig Sequence (386 bp)
>U35_12429 386 Hv_44K_v2 TCTAAGTACATCGGCATATCACAACTACCAATCATGGCGAATCACCATCTCCTCCTCATT CTTCTTGTATCTGCCTCCGCTGCGACCTCTTTAGCCTCCGTCACTCCGAGCAGCTCTCCC TATTCAACGGTATACGAGCTGCTAGAGAAGTACAGCTTCCCACGGGGAATCCTGCCAGAG GGTGTTCAAGACTATGCCCTCCAGCGAGACGGATCCTTTGAGGTCTCACTCCCCGGCGGC TGTGAGATCAACGTTGGGGGATTCACTCTTCGATATGAAGGAAACATGCATGGCAACATC CAGTCCATGCTGATTAACGAGCTGACAGGGGTGAGCGTCAAGGTTGCAATAAAATGGGTT AGCATCAATGCAGTTGAACGACATGG
Homology of Contig U35_12429 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |