barSeed - Barley Seed Development Database

Probe CUST_21274_PI390587928

Source Contig U35_24407

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21274_PI390587928	Hv_44K_v2	TGGGAAAGAGGAATGGAATGTTTTATGTGACACTCTTGCATCTAGACTTCTGAGTGCTGG	640	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364992	3957	2e-24	2050 - 2109	100	60 / 60	plus	ABC06281
MLOC	AK354341	3833	2e-24	2129 - 2188	100	60 / 60	plus	ABC06281
MLOC	MLOC_10432.1	3587	2e-24	1652 - 1711	100	60 / 60	plus	ABC06281
MLOC	AK356588	2841	3e-22	2030 - 2085	100	56 / 56	plus	ABC01689 ABC43248
JLOC1	JLOC1_6831.1	3580	8e-25	1652 - 1711	100	60 / 60	plus
Harvest21	ABC21306	700	3e-25	641 - 700	100	60 / 60	plus
Harvest35	U35_24407	700	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (700 bp)

>U35_24407 700 Hv_44K_v2
CTTTGTGTGACCAAAAATCACAAGAATCTTTATCCGAGGAGGAGAAAGAAACATGGAGCT
TCTTAAGGGTCATGTTCGAGGATGAGGATACTGCCAGAACAAAATTGCTTGTTCATCTTG
GATTCAACCCACCTCAAGAACCGACTGTGAATGCAACTGATGAACTGAGCAAAACATTGG
CTGATTCACTTAATCTTGATCATGGTACTGATAATATGGATGCCCAATTTCTTGCTGATA
ACGGGGATGATTTTTTCAATAATCCTCAACCTTCAGAGACTAGCTTGGCTGAGGAGCCAA
TATCTACAGATGGCCAAGAGATCGAGCAGGAAATACCTGAAAATATTGCGTCATCTGATC
CATCAATTGACAAAAGTATTCAACATGCATTGGTAGTTGGAGACTACAAAGGGGCAGTTA
ATCAGTGCCTTGCTGCAAATCGTATGGCTGATGCTCTGGTTATTGCCCATGCTGGTGGTT
CTGCTCTATGGGAAAGCACCAGAAACCAATATCTTAAGAACAGTATCTCACCCTATTTAA
AGGTTGTTTCTGCTATGGTTGCCAATGACTTGATGAGTTTTGTGAGTACGTGGCCACTAA
ATGCATGGAAGGAAACACTTGCACTACTGTGCACATTCGCTGGGAAAGAGGAATGGAATG
TTTTATGTGACACTCTTGCATCTAGACTTCTGAGTGCTGG

Homology of Contig U35_24407 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46370.1	1128	4e-120	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g19210.1	1121	9e-125
Arabidopsis v10	AT3G63460.1	1104	7e-67	transducin family protein / WD-40 repeat family protein \| chr3:23431009-23437241 REVERSE LENGTH=1104