- Probe CUST_21273_PI390587928
- Source Contig U35_24408
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21273_PI390587928 | Hv_44K_v2 | TCCTCTAAACACAATTTGGTGATCTTTTCTTCTTTCTATCAGTATATGTTTGGGCATGGA | 302 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.247 | 1.530 | 1.157 | 0.825 | 0.284 | 0.143 |
| Raw | 81.730 | 153.717 | 103.295 | 118.021 | 13.741 | 6.980 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC38375 | 385 | 6e-22 | 19 - 78 | 97 | 58 / 60 | minus | ABC38375 |
| Harvest35 | U35_24408 | 405 | 3e-25 | 303 - 362 | 100 | 60 / 60 | plus |
Contig Sequence (405 bp)
>U35_24408 405 Hv_44K_v2 AGAACAAGAAAGGCTCTGATGTCAAATCAGCCCTTACCGCTGCGTTTGCGAAGTACTCAG AAAAGGTCCGCAGCCAGGGCCGCGATGCGGCACATGAGGCCGGTGAAGGTCCTAGCAGCT CAACCATGGAAGGTGACAAGACAAAGCAATTAGATTAGCAACAGGACGTAGTGGCAAGTG GCAAACGTAGATGTACTGCTGTTGTTGTAGTTGTAAAACTTGCTTCCTTTGTTTATTACT CCTAGACAAGGGTGAATTTTGCATTGTACTAATTGTTACTGTAATGTAGGCGGCTTTCTC TTTCCTCTAAACACAATTTGGTGATCTTTTCTTCTTTCTATCAGTATATGTTTGGGCATG GAGCGGCCGCTCGAGCATCTTCGAAAGGGCCCAATTCGCCCTATA
Homology of Contig U35_24408 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |