barSeed - Barley Seed Development Database

Probe CUST_21271_PI390587928

Source Contig U35_12431

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21271_PI390587928	Hv_44K_v2	AACTGCGAGACTGCTTGGTACTGGGAATGGGAGCCGGACACTTAGCTTTGCAGGCAGCAA	441	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359749	2454	2e-23	473 - 530	100	58 / 58	plus	ABC09515 ABC13981
MLOC	AK251570.1	2330	2e-23	489 - 546	100	58 / 58	plus	ABC09515 ABC13981
MLOC	MLOC_20047.2	1118	2e-23	781 - 838	100	58 / 58	minus	ABC09515
MLOC	MLOC_20047.1	1033	2e-23	696 - 753	100	58 / 58	minus	ABC09515
JLOC1	JLOC1_13905.1	1217	1e-23	281 - 338	100	58 / 58	plus
Harvest21	ABC23693	501	3e-25	442 - 501	100	60 / 60	plus
Harvest35	U35_12431	502	3e-25	442 - 501	100	60 / 60	plus

Contig Sequence (502 bp)

>U35_12431 502 Hv_44K_v2
ATCAAACCACCTCCCCGTCGCGTCGATCCCAATCTGACCACCCCCAAAACCCTAACCCTC
ACTCGCCTCCTTGAACGGCGGCGGAGGCGTGAGATGGCTGCGCGGTCGTAAGCATTTCGG
AGGCGATCGCGGAGGTGGGGGCTTCCCTTGACCCGCCAGCGGTGTAGCTGGTGCCCGGCC
TGTGGGTATGGCGACGTCGTCGTCGGCTGGCGGGGGCGGTGCCGCCGGGGGCGCTCCTGG
ACTGAAGACTTACTTCAAGACTCCCGAGGGCCGGCATAAGCTGCAGTACGAGAAGACCCA
CTCCCCCTCCGTGCTGCACTACAACCACGGCGCTGGTGGAAAGACTGTTTCCGAGATGAC
GGTGGCATATTTGAAGGAGAAACCAGTGGGGCAGGGCTCTACACCTTCAACACCAAGTTC
CAGCAGTGGCATGCGATCTGCAACTGCGAGACTGCTTGGTACTGGGAATGGGAGCCGGAC
ACTTAGCTTTGCAGGCAGCAAC

Homology of Contig U35_12431 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None