barSeed - Barley Seed Development Database

Probe CUST_21270_PI390587928

Source Contig U35_12432

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21270_PI390587928	Hv_44K_v2	AACACAAGAAAGCTTTGGAACTTTATAGGAACTCACTAGAACTCTATAAGAGAGCCCTGC	564	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248246.1	3577	2e-24	581 - 640	100	60 / 60	plus	ABC29297 ABC49785
MLOC	MLOC_16577.2	894	2e-24	209 - 268	100	60 / 60	minus	None
MLOC	MLOC_16577.1	1403	2e-24	760 - 819	100	60 / 60	minus	None
JLOC1	JLOC1_11421.2	1167	8e-25	607 - 666	100	60 / 60	plus
JLOC1	JLOC1_11421.1	957	8e-25	397 - 456	100	60 / 60	plus
Harvest21	ABC24902	627	3e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_12432	627	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_12432 627 Hv_44K_v2
GGGGAAGGGAAGGGAGCGACGGCGGGATGGCGAGCGTGTACATACCGGTGCAGGGGACGG
AGGAGGAGGTGCGGGTGGCGCTGGACCTGCTCCCCACCGACGCCTCCGACATCCTCGACA
TCCTCAAGGCGGAGCAAGCCCCGCTCCACCTCTGGCTCATCATCGCGAGAGAATACTTCA
AGCAAGGAAAGATCGAGCAGTTCCGACAGATTTTAGAGGAAGGATCCGGACCAGAAATTG
ATGATTATTATGCCGATGTGAAGTATGAGCGGATAGCCATCCTTAATGCTTTGGGTGCTT
TTCATACTTTCTTGGGAAAGGCTGAGAGAGCACCACAGAAGGAAGCGCATTTCAAAGACG
CAACTCAGTACTACAATAGAGCGTCGAGGATAGATGAAACTGAACCGTCTACATGGATTG
GAAGAGGTCAACTCTGTGTGGCCAAGGGTGAGTTGCAAATGGCATCTGACTCATTCAAGA
TTGTTTTGGATGATGATGGGGATAATTTCCCAGCCCTTCTTGGTCAGGCTTCTGTTTATT
TCCTGATGGGTGATACGGAACAACAACACAAGAAAGCTTTGGAACTTTATAGGAACTCAC
TAGAACTCTATAAGAGAGCCCTGCGGG

Homology of Contig U35_12432 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g29360.1	1070	3e-119	protein\|tetratricopeptide repeat domain containing protein, expressed
Brachypodium v1_2	Bradi3g12240.1	1065	2e-123
Arabidopsis v10	AT2G06210.1	1091	4e-80	\| Symbols: ELF8, VIP6 \| binding \| chr2:2429108-2436588 REVERSE LENGTH=1091