barSeed - Barley Seed Development Database

Probe CUST_21268_PI390587928

Source Contig U35_12434

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21268_PI390587928	Hv_44K_v2	CTGGTATCTTTCCATCCTCAATTCATTTACACAGCGTAAATAGATCCCGAAAATGAAAAA	542	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81739.1	921	2e-24	9 - 68	100	60 / 60	plus	None
Harvest21	ABC22310	632	3e-25	543 - 602	100	60 / 60	minus
Harvest35	U35_12434	632	3e-25	543 - 602	100	60 / 60	minus

Contig Sequence (632 bp)

>U35_12434 632 Hv_44K_v2
GCCGCGCAGCGAATAAGTAGCCGTGCCCGCGCCGCAGCAGGCCGTGCCGCTCCAGCAGCT
CCCAGGGCGGCGACGCGCACGGGTCCGCCTCCACCACCGCCCCCGCCACCCGCGGCGGGA
ACCCGCGCAAAAAAGGCCGCAGGAAGTGCAGCACCAGCTCGTCCTCCGTCGGATCGAACT
CCTCCGCCTNGACCCCCGCCTCCTCCTTCACCACCACCCCGCCGGCGTCGCCCAGATCCA
TCCCCACCTCGAACTCCAATTTCCCGACCAAGTGAAGTCTCCCCTTGTTCCGATGGAGTC
AAGGCTCGGCAACCACCAGACAAGAAGATGCGGTAGAGTGGCTGGGCTCGCACGCTGCGT
TTCTTTCCAACCACCGCTGCCTGGTACATACTACTACCTTGTACCTTTCCCTATTCAGCC
CAACACGGAGTAGCCCGCCGAAATTCCGTGTTGGATCCGGCCCAATCCCTGATCATCAGC
TGTAAAAGGCACAGCACTAACGGCGGATCTGGCAAGGCTGTAAATTGGACACAAATCTCC
TTTTTTTCATTTTCGGGATCTATTTACGCTGTGTAAATGAATTGAGGATGGAAAGATACC
AGTGTCACGGCCACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_12434 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None