barSeed - Barley Seed Development Database

Probe CUST_21266_PI390587928

Source Contig U35_12438

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21266_PI390587928	Hv_44K_v2	ATACGTTGCCTCTGCTCGTGGGCTTTGTCACTCAGTGATCAGACATTGTTGTGTACAATT	586	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.918	2.921	2.134	0.784	0.198	0.239
Raw	3167.150	4707.120	3020.737	1752.220	156.792	207.795

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_43925.1	2591	1e-22	2387 - 2445	98	59 / 60	plus
Harvest21	ABC25245	653	3e-25	8 - 67	100	60 / 60	minus	ABC25245
Harvest35	U35_12438	653	3e-25	587 - 646	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_12438 653 Hv_44K_v2
CCCTATCAACACCTCCCGTGTGGTGGTCGGCTACCGCGCTCCGGAAACCTATGAGTCCAG
GAAATTCACCCACAAGTCGGACGTCTACAGCTTCGGCGTGCTCGTCATGGAGATGCTGAC
TGGAAAAGCCCCCCTCCAGTCGCAGGGGCAAGAAGACGTGATCGACCTGCCCAGGTGGGT
GCATTCCGTGGTCCGGGAGGAGTGGACCGCTGAGGTGTTCGACGTAGCGCTGATGAAGTA
CCATAACATCGAGGATGAACTGGTGCAGATGCTGCAGCTGGCCATGGCCTGCACGTCCCG
GTTCCCGGACCGGCGCCCCACGATGGCAGAGGTGATCAGGATGATCGAGGACCTCCGGCA
GTTCACCGCTTCCGAGAGCCGTGCCTCTTCCAATGAAAACCCGAGGGATTCCAATCCTCC
ATCGGCGTAATGCTGGGTGTGGCTGGCGACCCTCCATCGGGGTTTGTTCGTCCAGAAGCA
GCTCAAGCACTGGCTTGTATTCCATGAACAATTGTTGTATCCTTATAACTGTGCCGATAC
TCCATGCGTGCAAGTTAATTGGTAGTCTGTTTAACATGTAATCTTAATACGTTGCCTCTG
CTCGTGGGCTTTGTCACTCAGTGATCAGACATTGTTGTGTACAATTGNACGAC

Homology of Contig U35_12438 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21510.1	635	5e-79	protein\|inactive receptor kinase At2g26730 precursor, putative, expressed
Brachypodium v1_2	Bradi1g63350.1	641	5e-80
Arabidopsis v10	AT5G58300.1	654	1e-52	Leucine-rich repeat protein kinase family protein \| chr5:23572821-23574871 FORWARD LENGTH=654