barSeed - Barley Seed Development Database

Probe CUST_21248_PI390587928

Source Contig U35_24420

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21248_PI390587928	Hv_44K_v2	TTCGGTTGCAACAGATTTGAAGGAAATTGGAATGGATTGGGAAGGATTAAATTCCAAAAA	601	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.072	0.166	0.714	1.502	1.738	1.788
Raw	16.577	58.813	215.883	675.975	284.225	326.916

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356803	736	3e-21	601 - 654	100	54 / 54	plus	None
MLOC	MLOC_27727.1	908	3e-21	723 - 776	100	54 / 54	plus	None
JLOC1	JLOC1_18688.1	741	2e-21	592 - 645	100	54 / 54	plus
Harvest35	U35_24420	673	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_24420 673 Hv_44K_v2
GCACCCCGCCGCTCCCACGCCCAAACCGACACACAGGTAGGAGTAAGTACCGATCCTATC
CAACCGCCGTCACGTAGTACAGGCCCCCAAGCTAGCCAAGCCACCCAACGTGCAAGGCTC
AACTTTGCACGACCATGCAGCCCGCGACCGCGACGGCGACGGTTGTGCCTGTGCGCCCAT
CGTTGCGTGCCGTCCCGCGCTCGCTCGCTTCGGCGGAAAGGCTTGGGATGGGCCGTGCCG
CGACATGTACCACGGCGCTCCGCGCGCAGTGCGGCCTGGGTGCCGGGGCGGAACCGGTGG
AGGCGCGCAAGGAGGACGGACCCCTGCCTCAGGAGCTGGTCCAAGAGGAGGACAAGGTGC
TGGCGCCAGAGCAACTGGAATTGCTCGAGGACGAGGCCATGGCCGGGAAAGACGAGGGGC
GGAGTCCCACGGACTACGGCCGCCGCGCGCACATCTTCCAGGAGAGCTCCCGGGTGTTCC
GAGCACTCAAGGAGCGCCGTGACGAGGACGGCGGTGCCACCGCCACGGCTCAAGCCTCAA
ACAACACGCCCCACTCCTAAGGAAACAAGTAGACTAGCTCCTACAACTTGCTAAGGCCAT
GTTCGGTTGCAACAGATTTGAAGGAAATTGGAATGGATTGGGAAGGATTAAATTCCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_24420 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None