barSeed - Barley Seed Development Database

Probe CUST_21247_PI390587928

Source Contig U35_24421

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21247_PI390587928	Hv_44K_v2	TATGTCCATCGAGGCTCTGATCGAGCTGGGCGCCAAGACCATGTATGTGCCGGGTATCTT	696	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60990.3	878	2e-24	339 - 398	100	60 / 60	minus	ABC15214 ABC24352
MLOC	MLOC_60990.1	1386	2e-24	571 - 630	100	60 / 60	minus	ABC15214 ABC24352
MLOC	MLOC_60990.2	1301	2e-24	517 - 576	100	60 / 60	minus	ABC15214 ABC24352
JLOC1	JLOC1_39812.1	1446	8e-25	724 - 783	100	60 / 60	plus
Harvest21	ABC20147	772	3e-25	697 - 756	100	60 / 60	plus
Harvest35	U35_24421	772	3e-25	697 - 756	100	60 / 60	plus

Contig Sequence (772 bp)

>U35_24421 772 Hv_44K_v2
TCGAAACTATTGCTTTCCATCCACATCCACCACAATGGCGGTGGCGTCGCCTCTGCCTCT
GCAGATTTTCGTGGCCGCGCTTCTTGCGCTGTCCCTGTCCACGACAGCGTCCTCATCGCC
TGCGCCTGTGAACCGGAGCAGCTGCTACAAGCGTCTATTCAGCTTCGGCGACTCTCTAAC
TGACACAGGCAACTACATCATCCACTACTCCACCGCGTCAGGGCCCGTCCTAGCGCTGCC
ATACGGCGAGACCTTTTTCGGCCGCCCCTCCGGCCGTTGGTCCGACGGCCGCCTCATCGT
CGACTTCATCGTGGAGAGGCTGGGGTTCCAGTACTGGCCGGCGTACCTGCAGGTGTCAAC
CAGGAAGCTACCGGCGGAGGAATTCCGGTACGGCGCCAATTTTGCGGTTGCGGCCGCCAC
GGCGCTGAGCCAGGATTTCTTCCTGAAAAAGAACCTCAGCGTTGACCTGCTTACCCCGAG
CCCGATCCCCCCTTACTCCCTCGGCGTCCAGATCGGCTGGTTCAAGAAAGTGCTCGCCAT
GGTCGCCTCCACGGACCAAGAGAGGAAGGAGTTGATGGCGAGCTCGCTGTTCCTGGTGGG
GGAGATCGGCCTCAACGACTACAACCACCCCTTCTTGCAGAACAAGACCCTCGAATGGGT
CAGGCCCCTCGTGCCCCAGGTCATCAGGTCCATCGCTATGTCCATCGAGGCTCTGATCGA
GCTGGGCGCCAAGACCATGTATGTGCCGGGTATCTTCCCGCTGGGGTGCACC

Homology of Contig U35_24421 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44780.1	392	2e-93	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi1g19840.1	388	3e-103
Arabidopsis v10	AT5G45910.1	372	2e-54	GDSL-like Lipase/Acylhydrolase superfamily protein \| chr5:18620420-18622264 REVERSE LENGTH=372