barSeed - Barley Seed Development Database

Probe CUST_21241_PI390587928

Source Contig U35_24428

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21241_PI390587928	Hv_44K_v2	GTATATAGGGCTCTGGATGGCACCATTGTACACATGCCATAAGAAGCATCTGCAAAACTA	525	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.384	3.189	0.995	1.077	0.524	0.613
Raw	498.261	757.431	198.259	345.607	58.945	74.953

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58108.1	1976	2e-24	114 - 173	100	60 / 60	minus	ABC08611
MLOC	MLOC_58108.2	1966	2e-24	114 - 173	100	60 / 60	minus	ABC08611
Harvest21	ABC20262	588	3e-25	526 - 585	100	60 / 60	plus
Harvest35	U35_24428	588	3e-25	526 - 585	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_24428 588 Hv_44K_v2
GGCGTATTGGAGGATTTCTTCTCCAGACTAGGCATGTCAAAGCTGCGTTTTAAACCTGCC
TACAACCCATACACTGAACCAAGCATGGAAATTTTCGGCTACCACGAAGGTCTCAAGAAA
TGGATGGAAATAGGCAACTCAGGCATGTTCAGGCCTGAAGTGTTACTTCCCATGGGACTG
CCAGAGGGTGTTAATGTTATTGCATGGGGCCTTTCACTTGAAAGGCCAACGATGATTCTC
AATGGCATTAACAACATTCGGAAGCTCTTTGGGCCAAAGGTCAACTTCAAGGTCATCAAG
AACAGACCGATGTGCCGCCTGGGCTGTAGTAAAGTGGACAGAAGTTCAGCTGGAGGTGAC
ATGTCATGTTTGAGTTGATCAGCCGCTCGATGCGAAGGATGTTTCCTACGAACGGTGGCC
AAAAATTTACAAGGGTTCACTGTGGCATTCGACTTCTGGCCTAGTGGACAAACAAACAAC
GACGATAACAGGAGTTTTCCTCGGTGGCCATTCAGGGTGCAAGTGGTATATAGGGCTCTG
GATGGCACCATTGTACACATGCCATAAGAAGCATCTGCAAAACTATTT

Homology of Contig U35_24428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g26130.1	494	2e-61	protein\|phenylalanyl-tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi3g58130.1	499	7e-62
Arabidopsis v10	AT4G39280.1	485	4e-57	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative \| chr4:18281641-18284831 REVERSE LENGTH=485