- Probe CUST_21229_PI390587928
- Source Contig U35_14848
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21229_PI390587928 | Hv_44K_v2 | GGTCAGTCTTTCTCGCTCTCCCTGTTAGATACTGAATTCTATGGCTGTTACAAACGACCA | 7 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_1589.10 | 1327 | 2e-24 | 225 - 284 | 100 | 60 / 60 | plus | ABC23231 |
| MLOC | MLOC_1589.2 | 1517 | 2e-24 | 331 - 390 | 100 | 60 / 60 | plus | ABC23231 ABC43054 |
| MLOC | MLOC_1589.9 | 1963 | 2e-24 | 498 - 557 | 100 | 60 / 60 | plus | ABC43054 |
| MLOC | MLOC_1589.1 | 1458 | 2e-24 | 397 - 456 | 100 | 60 / 60 | plus | ABC23231 ABC43054 |
| MLOC | MLOC_1589.13 | 1390 | 2e-24 | 321 - 380 | 100 | 60 / 60 | plus | ABC43054 |
| MLOC | MLOC_1589.12 | 1386 | 2e-24 | 321 - 380 | 100 | 60 / 60 | plus | ABC43054 |
| MLOC | MLOC_1589.14 | 1719 | 2e-24 | 355 - 414 | 100 | 60 / 60 | plus | ABC23231 ABC43054 |
| MLOC | MLOC_1589.4 | 1461 | 2e-24 | 331 - 390 | 100 | 60 / 60 | plus | ABC43054 |
| MLOC | MLOC_1589.5 | 1472 | 2e-24 | 362 - 421 | 100 | 60 / 60 | plus | ABC23231 ABC43054 |
| MLOC | MLOC_1589.15 | 1854 | 2e-24 | 490 - 549 | 100 | 60 / 60 | plus | ABC23231 ABC43054 |
| MLOC | MLOC_1589.11 | 1463 | 2e-24 | 359 - 418 | 100 | 60 / 60 | plus | ABC43054 |
| MLOC | MLOC_1589.6 | 1778 | 2e-24 | 331 - 390 | 100 | 60 / 60 | plus | ABC23231 ABC43054 |
| MLOC | MLOC_1589.7 | 1632 | 2e-24 | 500 - 559 | 100 | 60 / 60 | plus | ABC23231 ABC43054 |
| MLOC | MLOC_1589.8 | 1828 | 2e-24 | 365 - 424 | 100 | 60 / 60 | plus | ABC43054 |
| MLOC | MLOC_1589.3 | 1536 | 9e-22 | 193 - 247 | 100 | 55 / 55 | plus | ABC43054 |
| JLOC1 | JLOC1_972.12 | 1458 | 8e-25 | 323 - 382 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.11 | 1378 | 8e-25 | 227 - 286 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.10 | 1366 | 8e-25 | 227 - 286 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.9 | 1345 | 8e-25 | 194 - 253 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.8 | 1363 | 8e-25 | 228 - 287 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.7 | 1329 | 8e-25 | 194 - 253 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.6 | 1644 | 8e-25 | 194 - 253 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_972.5 | 1370 | 5e-22 | 224 - 278 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_972.4 | 1685 | 5e-22 | 224 - 278 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_972.3 | 1669 | 5e-22 | 224 - 278 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_972.2 | 1354 | 5e-22 | 224 - 278 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_972.1 | 1703 | 5e-22 | 258 - 312 | 100 | 55 / 55 | plus | |
| Harvest35 | U35_14848 | 581 | 3e-25 | 8 - 67 | 100 | 60 / 60 | plus |
Contig Sequence (581 bp)
>U35_14848 581 Hv_44K_v2 GCTGGATGGTCAGTCTTTCTCGCTCTCCCTGTTAGATACTGAATTCTATGGCTGTTACAA ACGACCATTTCAAGACTGCACTAACAACAAGCAACCCATCTGCTCTCCGTGAAACTGTTG CTGAAGTTCCCAATGTCTCTTGGGAAGATATTGGTGGTCTGGAAAATGTCAAACGGGAGT TGCAGGAGACTGTCCAGTACCCTGTGGAGCATCCAGAGAAATTCGAGAAGTTTGGCATGT CCCCTTCCAAAGGTGTTCTGTTCTATGGCCCTCCTCGGTGTGGTAAAACCTTGTTGGCCA AGGCAATTGCAAATGAGTGCCAGGCTAACTTCATCAGTATCAAGGGACCTGAGCTGCTTA CCATGTGGTTTGGTGAGAGTCAGGCTAATGTACGTGAGATCTTTGACAAGGCTAGGGGGT CAGCACCATGTGTCCCCTTCTTTGATGAGCTTGACTCTATTGCTACCCAAAGAGGAAGTA GTGTTGGGGATGCTGGAGGTTGAACTGGAACACATTTCACGAGACACCCATGGTTATGTT GGTGCTGATCTTGCTGCTCTTTGTACCGAGGCTGCTCTCCA
Homology of Contig U35_14848 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g30580.1 | 809 | 2e-96 | protein|cell division control protein 48 homolog E, putative, expressed |
| Brachypodium v1_2 | Bradi1g74922.1 | 812 | 6e-99 | |
| Arabidopsis v10 | AT3G53230.1 | 815 | 1e-94 | ATPase, AAA-type, CDC48 protein | chr3:19723416-19726489 FORWARD LENGTH=815 |