barSeed - Barley Seed Development Database

Probe CUST_21227_PI390587928

Source Contig U35_26820

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21227_PI390587928	Hv_44K_v2	TCAACATTCTTGACCGACTCAATGTCCGTGAGAATGCAAGAACTAGCATCCTCTCAAGAC	569	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364248	2379	2e-24	590 - 649	100	60 / 60	plus	ABC29770
MLOC	MLOC_40056.4	1998	2e-24	102 - 161	100	60 / 60	plus	ABC29770
MLOC	MLOC_40056.3	1900	2e-24	1769 - 1828	100	60 / 60	minus	ABC29770
MLOC	MLOC_40056.2	2125	2e-24	1975 - 2034	100	60 / 60	minus	ABC29770
MLOC	MLOC_40056.1	2062	2e-24	1893 - 1952	100	60 / 60	minus	ABC29770
JLOC1	JLOC1_26170.1	2037	8e-25	111 - 170	100	60 / 60	plus
JLOC1	JLOC1_26169.1	2039	8e-25	1868 - 1927	100	60 / 60	minus
Harvest21	ABC23226	645	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_26820	645	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_26820 645 Hv_44K_v2
GAGGGGATCGGGTGTCAGTTATGCGCCGCCGCCTGCCGTGCGACGATCTCCCCCCTCTCG
CCGTCGCAATCTCCGGCGGATGCCTCGAATGAGGATCCAGTGCTGCTTCCGAGTAGGCGA
CCAAATAAGCAGCTCCCCCTTTGGGAGCTGCACTCCCCAATCGAAGCAACAGCAGCAGCG
GCGATCCGCAATCAAGCGGCTGCGCTCCGAGCTGCAACCGGCAATCCAAGCAATCAAGCG
GCTCCAATCTGAGCCGCAGTCCGCAATCGAAGCGGCTCCCTTTTTTAGTTGCAATCCGGA
ATCAGAGCAGTCCTTCCCGGATTAGAATCAGAAACAGGCCCTCTTTCGAATTCAGTCTCC
GAGTTTCCATTGGTGGCGGGAACCCAGCACCTATATATATCTGGCCGGAGGTACTCGCCA
ATCTTCGGAGGAGACCAAGCCGCGGCAACTCGTGAGCCTTCATCAGCTGTCAAATTCACG
GCGACTAATTCTTGTCGGGCCTCGGCGGATCTTCGTGGCAGCCATGGGAAAAGTTGATAG
GCTCAGCGCATTGCCTGACGACGTTCTGGTCAACATTCTTGACCGACTCAATGTCCGTGA
GAATGCAAGAACTAGCATCCTCTCAAGACGGTGGACTCAGCTCTG

Homology of Contig U35_26820 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None