barSeed - Barley Seed Development Database

Probe CUST_21220_PI390587928

Source Contig U35_26827

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21220_PI390587928	Hv_44K_v2	AATTTCACTAAAAGGCTCTTATCTGCTGTCTGATGAGGGTGGCTCCGGAAACAGTAATGG	413	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68518.1	3395	7e-23	2787 - 2846	98	59 / 60	minus	ABC02453 ABC29064 ABC38848
MLOC	MLOC_68518.2	1317	7e-23	545 - 604	98	59 / 60	minus	None
MLOC	MLOC_68517.1	4513	7e-23	1949 - 2008	98	59 / 60	minus	ABC02453 ABC02454 ABC29064 ABC38848
JLOC1	JLOC1_45342.2	3176	4e-23	789 - 848	98	59 / 60	plus
JLOC1	JLOC1_45342.1	3170	4e-23	783 - 842	98	59 / 60	plus
JLOC1	JLOC1_45341.5	5520	4e-23	2941 - 3000	98	59 / 60	minus
JLOC1	JLOC1_45341.4	3912	4e-23	1836 - 1895	98	59 / 60	minus
JLOC1	JLOC1_45341.3	4589	4e-23	1836 - 1895	98	59 / 60	minus
JLOC1	JLOC1_45341.2	4004	4e-23	1251 - 1310	98	59 / 60	minus
JLOC1	JLOC1_45341.1	4062	4e-23	1309 - 1368	98	59 / 60	minus
Harvest21	ABC25155	587	3e-25	414 - 473	100	60 / 60	plus
Harvest35	U35_26827	587	3e-25	414 - 473	100	60 / 60	plus

Contig Sequence (587 bp)

>U35_26827 587 Hv_44K_v2
GGCGAAAAGATCACGCGCCTAGGGTTCGGCGCCGCCCTCCATCGAACTCGGCGGCGGCGT
CTCGGGCCCTCCGCGCTCCTCCTCGCGGCAATGCGACCGCCGCCCGCGGTGATGACGGCC
TCCTCGTCGGAGAAGAAGGCGGCGAAGCGGAGGAGCGGACCGCCGAGGCCCCGGGGGAGG
AAGTCGCAGCTCGCCCTTCTCGGAGGGTGCTCACCTGGAAATGCATTTGCTCCACATATA
CTGCTTATCAATCGGGGAGAGGATATTACCTCCAAGATTATGCTGTTATCAGAGCTGCAG
TCCAAATCCATCTGCATTCTATCAGCCAATGGCCCATTATCAGCTATAACCCTCCGACTA
TCTTCAGAGTCAGGTGGCCTTGACAATGCAGTTTACCAGGGTCAGTTTGAGATAATTTCA
CTAAAAGGCTCTTATCTGCTGTCTGATGAGGGTGGCTCCGGAAACAGTAATGGGGGTCTA
AGCATTATGGTTTCTACTCCTTGCGGCAGCTTGTTTGGTGGTAGCGTTGGAGGGCCGCTC
ATCGCTGCAGACCCTGTGCAGGTAATTGCTGGAAGCTTCAATTATAC

Homology of Contig U35_26827 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None