barSeed - Barley Seed Development Database

Probe CUST_21217_PI390587928

Source Contig U35_38800

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21217_PI390587928	Hv_44K_v2	ATGGTTCAAACCGTCGCTGACTCGGTGAACTATCTGGTTGAGAGTGGGCAGCAACGTGCT	507	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74502.1	2382	2e-24	939 - 998	100	60 / 60	minus	None
JLOC1	JLOC1_49649.1	2405	8e-25	1408 - 1467	100	60 / 60	plus
Harvest21	ABC34731	608	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_38800	608	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (608 bp)

>U35_38800 608 Hv_44K_v2
GGCGGCGCGGGGGAGGCCAGGAGGTGGGATCTCGCGGCGGCGCGCGCGGTCAGGGATGCG
TCGGTGCTGGCGGACATGCTCTACTGGGGCAACAAGAGGAGCCTGCGCGCCCGGAGCCAA
TTCCTCCCGGCGCTGCGGTGCGTCGCCGAGCCGCACGCGCTCGTCGTCGGCGCCGTCAGG
GACTTCCTGGACAGAACCGAGCCCAAGAGCGACAAGAACTGGGAGAACTGCGCCGCGCTG
CTCTGTCTGGTCCCCAACCTCGCGGCCGAGCCGTCGGCGGCCACGCTGGACCGGGCCGGC
CGGCTGGCGGCGGACTGGAGGGAGATGATCGTCGGAAAGCCTGAAGGGCGCAGGGACCTC
GGCCGGCTCGCCGTATGGGGCCTTCTGCAGTTCCTCGTCTCGTACAAGATCACCTTGGAG
CTGGACGCTCGTGGGACAATGCACCTCCTTGCCGACGTCCCGCGCAACAAGAAGCAGAGC
TGCGTCGAGCTCTGCAACAGCCTTGGGATGGTTCAAACCGTCGCTGACTCGGTGAACTAT
CTGGTTGAGAGTGGGCAGCAACGTGCTGCTATCAACTATCTGATTGAGAATGGGCAGCAA
CTTGATGC

Homology of Contig U35_38800 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g15310.1	564	3e-69
Arabidopsis v10	None