- Probe CUST_21216_PI390587928
- Source Contig U35_38801
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21216_PI390587928 | Hv_44K_v2 | TAGAGAAAACCTTGTAGGGATGTAATTTTTTATGATCCTTGGGATACCCTCTCACCCTCC | 26 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.027 | 2.070 | 1.270 | 0.831 | 0.270 | 0.249 |
| Raw | 64.912 | 202.343 | 108.409 | 114.819 | 12.499 | 12.720 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_74502.1 | 2382 | 2e-24 | 61 - 120 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_49649.1 | 2405 | 8e-25 | 2286 - 2345 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38801 | 527 | 3e-25 | 27 - 86 | 100 | 60 / 60 | minus |
Contig Sequence (527 bp)
>U35_38801 527 Hv_44K_v2 TTTTTTTTTTTTTTTTTCTTTTTTTTGGAGGGTGAGAGGGTATCCCAAGGATCATAAAAA ATTACATCCCTACAAGGTTTTCTCTAACACAGTACAGACTCAGACGCTCACGCGCATACT AATCACAAGGTTAAGAAGGAAGTTTATGTTAATCCTAAAGTTTTAGGCTAAGACCGCCCA GTGACAAAGGCCAATCCACACGAACCGGAGTTGCAGGACTTGTTCCTCAGTTCTACTCAA TACAGTACTACTAACACGGACCAGAGCATGGAGAAGGCCCTCCTTGATCCTCTGGGAAGT GCTGGCCGCGACGATCACCTATCCCGCCCGCGTCGCACGCGAATGAGCCGCCGGCGCCGC CGCCAGGGGACAGCTCGGCGAACCGACTCCGCCACCTCTCCGCGCGCGTAATGCATTTCC TGTTCCGGTGGTAGTCGTGCTCTCGCGTCCGCTTCCTGCTCTGCTTCTCCCCCGGCCTCT GCCCGCCATGCCGCTCCTTCTGCTGCCGACGCCATTCCGGCGTCGGC
Homology of Contig U35_38801 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |