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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_21198_PI390587928Hv_44K_v2AAGAAGCGCCAGCGCATGCAGTTCCCTTCCCGTGATTTTACTTCCTTACCCATCGCGCTT780GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9701.2800.9330.9240.9651.004
Raw 6.57611.8499.39611.4764.0065.340



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_11453.115532e-24502 - 56110060 / 60minus ABC06968
JLOC1JLOC1_7586.115318e-25990 - 104910060 / 60plus
Harvest35U35_2683110093e-25781 - 84010060 / 60plus



Contig Sequence (1009 bp)

>U35_26831 1009 Hv_44K_v2
CAAGCAACCACACCTGCCTGCCTGCCTGCCTGCCTGCCTTTTGAGGGATTTTGACGTCTG
CGGGTGAGTTAGAGTAGAGGGAACTCCCCGTGCCTGAGGCAAGTACGCAGGAGATACATA
GATAGGATGGACAGCCTCCATACGGAGCTCGCGCTGGGGCTGATCGGGTGCGGCCACGGC
GATTTCCAGACGGCGCCGTTCGTGGCCAAGACGTACCAGATGGTGTGTGACCCTAGGACG
GACGCTCTCGTCAGGTGGGGGAAGGGCAACAACAGCTTCCTCGTCCCGGACGTCGCCGGC
TTCTCGCAGCTCCTCCTCCCCTGCTTCTTCAAGCACGGCAACTTCTCCAGCTTCGTCCGC
CAGCTCAACACATATGGCTTCCGGAAGGTGCACCCGGACCGATGGGAGTTCGCGCACGAG
TCGTTTCTGCGCGGCCAAACGCACCTGCTGCCGCGCATCGTGCGCCGCAAGAAGCGCGGC
GAGGCCGGTGTTGGCGCCTCCTGCTCCTCTGCAGTCGGCGGCGCTGAGCAGCACCAGCAC
GTGGTGGCCAATATGGGAGACGAAGTGGAGGAGGAAGAGGAAGAGGAGGAGAGTGAGGCG
CTGCTTGAGGAGGTTCAGAGGCTGCGGAAGGAGCAGACGGCTATCGGGGAGCAGCTGGCG
AAGATGAGCCGGCGACTGCAGGCGACGGAGCGGCGGCCTGACCGGCTCATGTCCTTCCTC
GCCCGGCTCGCCGAGGATCCCAGCGCCACCTCGCTCCACCTTTTCGAACAGGCAGCCGAG
AAGAAGCGCCAGCGCATGCAGTTCCCTTCCCGTGATTTTACTTCCTTACCCATCGCGCTT
CCTCTTCAGCCCGCACCTTCACCGCCGCCGCCACCGCTATTGGCGCTCGGCGACGCGGCC
ATGGGCGGGGTCAGAGTCTGGCAATGGGCGGAGCCGATACCACTGAAACTCACAACCTTC
GAGCAGCCCTCCGCGAGCTCTGGGGTGCAGCAGGTGCCGGAGTTCGAGA



Homology of Contig U35_26831 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g43590.23405e-100protein|HSF-type DNA-binding domain containing protein, expressed
Brachypodium v1_2Bradi2g44050.13365e-106
Arabidopsis v10None