barSeed - Barley Seed Development Database

Probe CUST_21191_PI390587928

Source Contig U35_26838

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21191_PI390587928	Hv_44K_v2	ACGAAACATCGGTGTAAAAGATTGAGTGGGATGGTTATAGTAAGGGGCGAACCAAGTGCT	527	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.473	2.081	1.252	0.719	0.434	0.388
Raw	1940.000	1632.256	981.571	828.908	188.841	182.963

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_431.1	792	2e-24	532 - 591	100	60 / 60	minus	None
JLOC1	JLOC1_263.1	524	8e-25	268 - 327	100	60 / 60	minus
Harvest35	U35_26838	676	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_26838 676 Hv_44K_v2
ATCTCAGTGATCTTATCGCCCGGCAAAGCGGAGACGGACGACCACGGTCCCGACCTTACC
AGCACCGTAGGTTTACTAATCAATGAAGCCCCTCAACCTACTATCTTTTCTTACAAACTC
AACCAAGCCTAACCAAACCCCATGCTCACGACATGTTCTTGATATTGATTGAGTTGGAGG
GAGTCAGAGACTACCACGGAATCCTTCCATAGTCACCCCGGTGACCTTCGTCACCAAAGC
GTCACGACAGTTTCCAAGACCCCTCATATAATCTCCAGTGGGGATCAGTCGGAGCACGTA
GGAATGCCGACCACTACATAAGCCACGTCTGGCTGAGGCGAGCAGCAAGCGGGGGAGAGT
ATTTTGAAGTACAAGAACGTTGGGGTGGGACGCTAGTACTTAAACTAGGGTTGCTTCTTA
GCGCTAATCTTGCGTTTTTCAGCAGTTAGTTGTAGCGCGCCTTCCCTCCTTCTCTCATTT
CGGAAAGATTTGGCAGTATTTTCTTATGATGACCTGGTCGAGAGAGTACGAAACATCGGT
GTAAAAGATTGAGTGGGATGGTTATAGTAAGGGGCGAACCAAGTGCTTGCGCGAAGAAGC
GAATCAATCAGAATGGAGACAAGGAAAGGAGGAGAGGCGAAACTCAACCAAAAAAAAAAA
AAAAAACGTCGAGGGG

Homology of Contig U35_26838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None